6YT5

Cryo-EM structure of T7 bacteriophage DNA translocation gp15-gp16 core complex intermediate assembly

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G, H, I, J, K G, H, I, J, K, L	PF01464	Transglycosylase SLT domain (SLT)	Transglycosylase SLT domain	This family is distantly related to Pfam:PF00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in [4]).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Internal virion protein gp15	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component host cellular component host cell part host cell periplasmic space cellular anatomical entity
G, H, I, J, K G, H, I, J, K, L	Peptidoglycan transglycosylase gp16	lytic transglycosylase activity peptidoglycan muralytic activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity hydrolase activity	organic substance metabolic process organonitrogen compound metabolic process glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope organic substance metabolic process organonitrogen compound metabolic process glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process macromolecule metabolic process symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan disruption of cellular anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism cellular process disruption of cell in another organism killing of cells of another organism cell killing symbiont genome ejection through host cell envelope symbiont entry into host cell via disruption of host cell envelope response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus symbiont genome ejection through host cell envelope, short tail mechanism	membrane cellular anatomical entity virion component host cell plasma membrane host cellular component host cell part host cell membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR038993	Internal virion protein Gp15	Family
G, H, I, J, K G, H, I, J, K, L	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
G, H, I, J, K G, H, I, J, K, L	IPR008258	Transglycosylase SLT domain 1	Domain
G, H, I, J, K G, H, I, J, K, L	IPR038994	Internal virion protein Gp16	Family
G, H, I, J, K G, H, I, J, K, L	IPR000189	Prokaryotic transglycosylase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.