Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6yaca_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Bd6yacb_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Cd6yacc_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Dd6yacd_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Ed6yace1 All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Ed6yace2 Artifacts Tags Tags Tags N-terminal Tags (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Fd6yacf_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Jd6yacj_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Ld6yacl_ Membrane and cell surface proteins and peptides Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
M [auth 1]d6yac1_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
N [auth 2]d6yac2_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
O [auth 3]d6yac3_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
P [auth 4]d6yac4_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)
Q [auth N]d6yacn_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin-related automated matches (Pisum sativum ) [TaxId: 3888 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPhotosystem I subunits PsaA/PsaB8096179 4002118 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8096180 3000850 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8074466 3000850 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins8074478 3000020 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD8074482 3000951 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins8074498 3000325 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8074442 3000813 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I reaction centre subunit VI8102525 3002733 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit IX of photosystem I reaction centre PsaJ8074522 3000824 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8087174 3000870 SCOP2B (2022-06-29)
N [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein8076998 3000343 SCOP2B (2022-06-29)
O [auth 3]SCOP2B SuperfamilyChlorophyll a-b binding protein8076994 3000343 SCOP2B (2022-06-29)
P [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein8077000 3000343 SCOP2B (2022-06-29)
Q [auth N]SCOP2 Family2Fe-2S ferredoxin-related8098325 4000982 SCOP2 (2022-06-29)
Q [auth N]SCOP2 Superfamily2Fe-2S ferredoxin-like8098326 3000113 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00223e6yacA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
APF00223e6yacA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
BPF00223e6yacB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
BPF00223e6yacB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
CPF00037e6yacC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
DPF02531e6yacD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
EPF02427e6yacE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
FPF02507e6yacF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
GPF01241e6yacG1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PF01241ECOD (1.6)
HPF03244e6yacH1 A: extended segmentsX: Subunit VI of Photosystem I reaction centre (From Topology)H: Subunit VI of Photosystem I reaction centre (From Topology)T: Subunit VI of Photosystem I reaction centreF: PF03244ECOD (1.6)
IPF00796e6yacI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
JPF01701e6yacJ1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
KPF01241e6yacK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PF01241ECOD (1.6)
LPF02605e6yacL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
M [auth 1]PF00504e6yac11 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
N [auth 2]PF00504e6yac21 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
O [auth 3]PF00504e6yac31 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
P [auth 4]PF00504e6yac41 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
Q [auth N]PF00111e6yacN1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00111ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF02531PsaD (PsaD)PsaD- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
N [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth N]PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
PsaD-
PsaE-
PsaF-
PsaG---
PsaH-
Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit IX-
Photosystem I reaction center subunit X psaK-
PsaL-
M [auth 1]Lhca1---
N [auth 2]Chlorophyll a-b binding protein, chloroplastic
O [auth 3]Chlorophyll a-b binding protein 3, chloroplastic
P [auth 4]Chlorophyll a-b binding protein P4, chloroplastic
Q [auth N]Ferredoxin-1, chloroplastic -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
N [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth N]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
Q [auth N]IPR010241Ferredoxin [2Fe-2S], plantFamily
Q [auth N]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
Q [auth N]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
Q [auth N]IPR0060582Fe-2S ferredoxin, iron-sulphur binding siteBinding Site

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, E, F
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, E, F
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage