6XTX
CryoEM structure of human CMG bound to ATPgammaS and DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H [auth B] | SCOP2B Superfamily | PriA/YqbF domain | 8033893 | 3000274 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | GINS helical bundle-like | 8033892 | 3001594 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | PriA/YqbF domain | 8035319 | 3000274 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | GINS helical bundle-like | 8035318 | 3001594 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | PriA/YqbF domain | 8033897 | 3000274 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | GINS helical bundle-like | 8033896 | 3001594 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2B Superfamily | GINS helical bundle-like | 8033891 | 3001594 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth 4] | PF17207 | e6xtx45 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
C [auth 4] | PF17855 | e6xtx43 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
C [auth 4] | PF14551 | e6xtx42 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
C [auth 4] | PF00493 | e6xtx44 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
C [auth 4] | PF17207 | e6xtx41 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
H [auth B] | PF05916 | e6xtxB2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: PF05916 | ECOD (1.6) |
H [auth B] | F_UNCLASSIFIED | e6xtxB1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth C] | PF05916 | e6xtxC1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: PF05916 | ECOD (1.6) |
I [auth C] | PF22466 | e6xtxC2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: PF22466 | ECOD (1.6) |
A [auth 2] | PF17207 | e6xtx25 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
A [auth 2] | F_UNCLASSIFIED | e6xtx26 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth 2] | PF17855 | e6xtx24 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
A [auth 2] | PF14551 | e6xtx21 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
A [auth 2] | PF00493 | e6xtx23 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
A [auth 2] | F_UNCLASSIFIED | e6xtx22 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth D] | PF05916 | e6xtxD2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: PF05916 | ECOD (1.6) |
J [auth D] | PF16922 | e6xtxD1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: PF16922 | ECOD (1.6) |
K [auth E] | PF02724 | e6xtxE1 | A: alpha arrays | X: HhH/H2TH | H: Cdc45 CID domain (From Topology) | T: Cdc45 CID domain | F: PF02724 | ECOD (1.6) |
K [auth E] | PF02724 | e6xtxE3 | A: a+b three layers | X: C-terminal domain in DHH phosphoesterases (From Topology) | H: C-terminal domain in DHH phosphoesterases (From Topology) | T: C-terminal domain in DHH phosphoesterases | F: PF02724 | ECOD (1.6) |
K [auth E] | PF02724 | e6xtxE2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: DHH phosphoesterases | F: PF02724 | ECOD (1.6) |
D [auth 5] | PF17207 | e6xtx55 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
D [auth 5] | PF17855 | e6xtx54 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
D [auth 5] | PF14551 | e6xtx52 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
D [auth 5] | PF00493 | e6xtx51 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
D [auth 5] | F_UNCLASSIFIED | e6xtx53 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth 7] | PF17207 | e6xtx74 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
F [auth 7] | PF17855 | e6xtx72 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
F [auth 7] | PF14551 | e6xtx75 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
F [auth 7] | PF00493 | e6xtx71 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
F [auth 7] | F_UNCLASSIFIED | e6xtx73 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth A] | PF05916 | e6xtxA1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: PF05916 | ECOD (1.6) |
G [auth A] | F_UNCLASSIFIED | e6xtxA2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
H [auth B] | 3.40.5.50 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (utative) |
J [auth D] | 1.20.58.1030 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
J [auth D] | 3.40.5.60 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth 3] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
B [auth 3] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
B [auth 3] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
B [auth 3] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
C [auth 4] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
C [auth 4] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
C [auth 4] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
C [auth 4] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
E [auth 6] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
E [auth 6] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
E [auth 6] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
E [auth 6] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
H [auth B] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
I [auth C] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
A [auth 2] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
A [auth 2] | PF12619 | Mini-chromosome maintenance protein 2 (MCM2_N) | Mini-chromosome maintenance protein 2 | - | Family |
A [auth 2] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
A [auth 2] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
A [auth 2] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
J [auth D] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |
J [auth D] | PF16922 | DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) | DNA replication complex GINS protein SLD5 C-terminus | The C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. | Domain |
K [auth E] | PF02724 | CDC45-like protein (CDC45) | CDC45-like protein | - | Family |
D [auth 5] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
D [auth 5] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
D [auth 5] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
D [auth 5] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
F [auth 7] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
F [auth 7] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
F [auth 7] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
F [auth 7] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
G [auth A] | PF05916 | GINS complex protein (Sld5) | GINS complex protein | - | Family |