6XIR

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
JSCOP2B SuperfamilyRL5-like8096932 3001709 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTranslational proteins8096942 3000811 SCOP2B (2022-06-29)
T [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
U [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
AA [auth AB]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
EA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
FA [auth b]SCOP2B SuperfamilyRibosomal protein L29e8096930 3002157 SCOP2B (2022-06-29)
GA [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
IA [auth e]SCOP2 FamilyRibosomal protein L32e8102035 4003517 SCOP2 (2022-06-29)
IA [auth e]SCOP2 SuperfamilyRibosomal protein L32e8102036 3000982 SCOP2 (2022-06-29)
JA [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
DSCOP2 FamilyRibosomal protein L5e and archael L18-like8096937 4006591 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyTranslational machinery components8096938 3000571 SCOP2 (2022-06-29)
NA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8096924 3002206 SCOP2B (2022-06-29)
PA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
SA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
UA [auth q]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
VA [auth r]SCOP2B SuperfamilyRibosomal S3Ae-like8101309 3002166 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
ZA [auth v]SCOP2B SuperfamilyRibosomal protein S78065999 3000799 SCOP2B (2022-06-29)
AB [auth w]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
EB [auth AD]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
EB [auth AD]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
FB [auth AE]SCOP2B SuperfamilyTranslational machinery components8098660 3000571 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
HB [auth AG]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
JB [auth AI]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)
LB [auth AK]SCOP2 FamilyRibosomal protein S108096927 4001240 SCOP2 (2022-06-29)
LB [auth AK]SCOP2 SuperfamilyRibosomal protein S108096928 3001336 SCOP2 (2022-06-29)
MB [auth AL]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
NB [auth AM]SCOP2B SuperfamilyRibosomal protein S88101311 3000709 SCOP2B (2022-06-29)
QB [auth AP]SCOP2 FamilyRibosomal protein S25-like8096933 4007308 SCOP2 (2022-06-29)
QB [auth AP]SCOP2 SuperfamilyWinged helix DNA-binding domain8096934 3000034 SCOP2 (2022-06-29)
RB [auth AQ]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096936 3000068 SCOP2B (2022-06-29)
TB [auth AS]SCOP2 FamilyCold shock DNA-binding domain-like8096943 4001909 SCOP2 (2022-06-29)
TB [auth AS]SCOP2 SuperfamilyNucleic acid-binding proteins8096944 3000135 SCOP2 (2022-06-29)
UB [auth AT]SCOP2 FamilyRibosomal protein S14p/S29e8096925 4003647 SCOP2 (2022-06-29)
UB [auth AT]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8096926 3000068 SCOP2 (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein L16p/L10e8101313 3000884 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e6xirA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e6xirA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
JPF00281,PF00673e6xirJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
K [auth L]PF01294e6xirL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
L [auth M]PF00467,PF01929e6xirM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
M [auth N]PF00827e6xirN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
N [auth O]PF00572e6xirO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
O [auth P]PF00237e6xirP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
P [auth Q]PF17135e6xirQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Q [auth R]PF01280e6xirR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Q [auth R]PF01280e6xirR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
R [auth S]F_UNCLASSIFIEDe6xirS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
R [auth S]PF01775e6xirS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
S [auth T]PF01157e6xirT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
BPF00297e6xirB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
T [auth U]PF01776e6xirU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
U [auth V]PF00238e6xirV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
V [auth W]PF01246e6xirW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
W [auth X]PF00276,PF03939e6xirX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
X [auth Y]PF16906e6xirY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
Y [auth Z]PF01777e6xirZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
Z [auth AA]PF03501e6xirAA1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
AA [auth AB]PF00366,PF16205e6xirAB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
CPF00573e6xirC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e6xirC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
EA [auth a]PF00828e6xira1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
FA [auth b]PF01779e6xirb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
GA [auth c]PF01248e6xirc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HA [auth d]PF01198e6xird1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
IA [auth e]PF01655e6xire1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
JA [auth f]PF01247e6xirf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
KA [auth g]PF01199e6xirg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
LA [auth h]PF00831e6xirh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
MA [auth i]PF01158e6xiri1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
DPF14204,PF17144e6xirD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
NA [auth j]PF01907e6xirj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
OA [auth k]PF01781e6xirk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
PA [auth l]PF00832e6xirl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
QA [auth n]PF05162e6xirn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
RA [auth o]PF00935e6xiro1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
SA [auth p]PF01780e6xirp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
UA [auth q]PF00318e6xirq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
VA [auth r]PF01015e6xirr1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
VA [auth r]PF01015e6xirr2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
WA [auth s]PF03719e6xirs1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
WA [auth s]PF00333e6xirs2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
WA [auth s]PF00333e6xirs3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
EPF01159e6xirE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
XA [auth t]PF00189e6xirt2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
XA [auth t]PF07650e6xirt1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
YA [auth u]PF00900e6xiru2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
YA [auth u]PF00467,PF16121e6xiru1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
YA [auth u]PF00900,PF01479,PF08071e6xiru3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
ZA [auth v]PF00177e6xirv1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
AB [auth w]PF01092e6xirw1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
BB [auth x]PF01251e6xirx1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
CB [auth y]PF01201e6xiry1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
DB [auth z]PF00163,PF01479e6xirz1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
EB [auth AD]PF08069e6xirAD1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
EB [auth AD]PF00312e6xirAD2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
FB [auth AE]PF00411e6xirAE1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
GB [auth AF]PF00203e6xirAF1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
FPF00327,PF08079e6xirF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
HB [auth AG]PF00380e6xirAG1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
IB [auth AH]PF00833e6xirAH1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
JB [auth AI]PF00416e6xirAI1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
KB [auth AJ]PF01090e6xirAJ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
LB [auth AK]PF00338e6xirAK1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
MB [auth AL]PF01249e6xirAL1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
NB [auth AM]PF00410e6xirAM1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
NB [auth AM]PF00410e6xirAM2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
OB [auth AN]PF00164e6xirAN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
PB [auth AO]PF01282e6xirAO1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
QB [auth AP]PF03297e6xirAP1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
GPF01248e6xirG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
RB [auth AQ]PF01283e6xirAQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
SB [auth AR]PF01667e6xirAR1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
TB [auth AS]PF01200e6xirAS1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
UB [auth AT]PF00253e6xirAT1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
VB [auth AV]PF00400e6xirAV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
HPF00347e6xirH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
IPF00252e6xirI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
L [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
L [auth M]PF00467KOW motif (KOW)KOW motif- Family
M [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
N [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
O [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
P [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Q [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
R [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
S [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
T [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
U [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
W [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
W [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
X [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Y [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
Z [auth AA]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
AA [auth AB]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
AA [auth AB]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
FA [auth b]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
GA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
HA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
IA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
JA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
KA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
LA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
MA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
NA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
OA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
RA [auth o]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
SA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
UA [auth q]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
VA [auth r]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
WA [auth s]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
WA [auth s]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
XA [auth t]PF07650KH domain (KH_2)KH domain- Domain
XA [auth t]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
YA [auth u]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
YA [auth u]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
YA [auth u]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
YA [auth u]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
YA [auth u]PF00467KOW motif (KOW)KOW motif- Family
ZA [auth v]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
AB [auth w]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
BB [auth x]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
CB [auth y]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
DB [auth z]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
DB [auth z]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
EB [auth AD]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
EB [auth AD]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
FB [auth AE]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
GB [auth AF]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
HB [auth AG]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IB [auth AH]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
JB [auth AI]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
KB [auth AJ]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
LB [auth AK]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
MB [auth AL]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
NB [auth AM]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OB [auth AN]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PB [auth AO]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
QB [auth AP]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
RB [auth AQ]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
SB [auth AR]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
TB [auth AS]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
UB [auth AT]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
VB [auth AV]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L2-A
RPL11B isoform 1
K [auth L]60S ribosomal protein L13-A
L [auth M]60S ribosomal protein L14-A
M [auth N]60S ribosomal protein L15-A
N [auth O]60S ribosomal protein L16-A
O [auth P]60S ribosomal protein L17-A
P [auth Q]60S ribosomal protein L18-A
Q [auth R]60S ribosomal protein L19-A
R [auth S]60S ribosomal protein L20-A
S [auth T]60S ribosomal protein L21-A
RPL3 isoform 1
T [auth U]60S ribosomal protein L22-A
U [auth V]60S ribosomal protein L23-A
V [auth W]RPL24A isoform 1- - -
W [auth X]60S ribosomal protein L25
X [auth Y]60S ribosomal protein L26-A
Y [auth Z]60S ribosomal protein L27-A
Z [auth AA]40S ribosomal protein S10-A
AA [auth AB]40S ribosomal protein S11-A
BA [auth 1]35S ribosomal RNA---
CA [auth 3]5S ribosomal RNA---
RPL4A isoform 1
DA [auth 4]5.8S ribosomal RNA---
EA [auth a]60S ribosomal protein L28
FA [auth b]RPL29 isoform 1
GA [auth c]60S ribosomal protein L30
HA [auth d]60S ribosomal protein L31-A
IA [auth e]RPL32 isoform 1
JA [auth f]60S ribosomal protein L33-A
KA [auth g]60S ribosomal protein L34-A
LA [auth h]60S ribosomal protein L35-A
MA [auth i]60S ribosomal protein L36-A
RPL5 isoform 1
NA [auth j]60S ribosomal protein L37-A
OA [auth k]RPL38 isoform 1
PA [auth l]60S ribosomal protein L39
QA [auth n]RPL41A isoform 1---
RA [auth o]60S ribosomal protein L42-A
SA [auth p]60S ribosomal protein L43-A
TA [auth 2]18S ribosomal RNA---
UA [auth q]40S ribosomal protein S0-A
VA [auth r]RPS1A isoform 1
WA [auth s]RPS2 isoform 1
60S ribosomal protein L6-A
XA [auth t]RPS3 isoform 1
YA [auth u]40S ribosomal protein S4-A
ZA [auth v]Rps5p
AB [auth w]40S ribosomal protein S6-A
BB [auth x]40S ribosomal protein S7-A
CB [auth y]RPS8A isoform 1
DB [auth z]40S ribosomal protein S9-A
EB [auth AD]40S ribosomal protein S13
FB [auth AE]40S ribosomal protein S14-B
GB [auth AF]RPS15 isoform 1
60S ribosomal protein L7-A
HB [auth AG]40S ribosomal protein S16-A
IB [auth AH]40S ribosomal protein S17-B
JB [auth AI]40S ribosomal protein S18-A
KB [auth AJ]40S ribosomal protein S19-A
LB [auth AK]RPS20 isoform 1
MB [auth AL]40S ribosomal protein S21-A
NB [auth AM]RPS22A isoform 1
OB [auth AN]40S ribosomal protein S23-A
PB [auth AO]40S ribosomal protein S24-A
QB [auth AP]RPS25A isoform 1- -
RPL8A isoform 1---
RB [auth AQ]RPS26B isoform 1
SB [auth AR]40S ribosomal protein S27-A
TB [auth AS]RPS28A isoform 1
UB [auth AT]RPS29A isoform 1
VB [auth AV]Guanine nucleotide-binding protein subunit beta-like protein
WB [auth AX],
XB [auth AZ]
Transfer RNA---
RPL9A isoform 1---
RPL10 isoform 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
K [auth L]IPR001380Large ribosomal subunit protein eL13Family
K [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
L [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth M]IPR039660Large ribosomal subunit protein eL14Family
L [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
L [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth M]IPR005824KOWDomain
M [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth N]IPR000439Large ribosomal subunit protein eL15Family
N [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth O]IPR005822Large ribosomal subunit protein uL13Family
N [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
O [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth P]IPR001063Large ribosomal subunit protein uL22Family
O [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
P [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
P [auth Q]IPR000039Large ribosomal subunit protein eL18Family
P [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth R]IPR039547Large ribosomal subunit protein eL19Family
Q [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Q [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
Q [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
R [auth S]IPR028877Large ribosomal subunit protein eL20Family
R [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
R [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
T [auth U]IPR002671Large ribosomal subunit protein eL22Family
T [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
U [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth V]IPR000218Large ribosomal subunit protein uL14Family
U [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
V [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
V [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
V [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
W [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
W [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
X [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth Y]IPR005824KOWDomain
X [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
X [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
Y [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
Y [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth Z]IPR001141Large ribosomal subunit protein eL27Family
Y [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Z [auth AA]IPR037447Small ribosomal subunit protein eS10Family
Z [auth AA]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Z [auth AA]IPR005326Plectin/eS10, N-terminalDomain
AA [auth AB]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
AA [auth AB]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
AA [auth AB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth AB]IPR000266Small ribosomal subunit protein uS17Family
AA [auth AB]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
EA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth a]IPR030878Large ribosomal subunit protein uL15Family
EA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth b]IPR002673Large ribosomal subunit protein eL29Family
GA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth d]IPR000054Large ribosomal subunit protein eL31Family
IA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth e]IPR001515Large ribosomal subunit protein eL32Family
IA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
JA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth f]IPR001780Large ribosomal subunit protein eL33Family
JA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
KA [auth g]IPR008195Large ribosomal subunit protein eL34Family
KA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
LA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
LA [auth h]IPR001854Large ribosomal subunit protein uL29Family
LA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
MA [auth i]IPR000509Large ribosomal subunit protein eL36Family
MA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
NA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth j]IPR001569Large ribosomal subunit protein eL37Family
NA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth k]IPR002675Large ribosomal subunit protein eL38Family
OA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
PA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
PA [auth l]IPR000077Large ribosomal subunit protein eL39Family
PA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
RA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth o]IPR000552Large ribosomal subunit protein eL42Family
SA [auth p]IPR002674Large ribosomal subunit protein eL43Family
SA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
UA [auth q]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
UA [auth q]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
UA [auth q]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
UA [auth q]IPR001865Small ribosomal subunit protein uS2Family
UA [auth q]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
VA [auth r]IPR001593Small ribosomal subunit protein eS1Family
VA [auth r]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
VA [auth r]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
WA [auth s]IPR000851Small ribosomal subunit protein uS5Family
WA [auth s]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
WA [auth s]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
WA [auth s]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
WA [auth s]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
WA [auth s]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
WA [auth s]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
XA [auth t]IPR004044K Homology domain, type 2Domain
XA [auth t]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
XA [auth t]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
XA [auth t]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
XA [auth t]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
XA [auth t]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
XA [auth t]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
YA [auth u]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
YA [auth u]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
YA [auth u]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
YA [auth u]IPR002942RNA-binding S4 domainDomain
YA [auth u]IPR013845Small ribosomal subunit protein eS4, central regionDomain
YA [auth u]IPR000876Small ribosomal subunit protein eS4Family
YA [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth u]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
YA [auth u]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
YA [auth u]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
YA [auth u]IPR005824KOWDomain
ZA [auth v]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
ZA [auth v]IPR000235Small ribosomal subunit protein uS7Family
ZA [auth v]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
ZA [auth v]IPR023798Small ribosomal subunit protein uS7 domainDomain
ZA [auth v]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
AB [auth w]IPR014401Small ribosomal subunit protein eS6-likeFamily
AB [auth w]IPR001377Small ribosomal subunit protein eS6Family
AB [auth w]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
BB [auth x]IPR000554Small ribosomal subunit protein eS7Family
BB [auth x]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
CB [auth y]IPR001047Small ribosomal subunit protein eS8Family
CB [auth y]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
CB [auth y]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
CB [auth y]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
DB [auth z]IPR002942RNA-binding S4 domainDomain
DB [auth z]IPR022801Small ribosomal subunit protein uS4Family
DB [auth z]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
DB [auth z]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
DB [auth z]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
DB [auth z]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
EB [auth AD]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
EB [auth AD]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
EB [auth AD]IPR000589Small ribosomal subunit protein uS15Family
EB [auth AD]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
FB [auth AE]IPR001971Small ribosomal subunit protein uS11Family
FB [auth AE]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FB [auth AE]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GB [auth AF]IPR002222Small ribosomal subunit protein uS19Family
GB [auth AF]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
GB [auth AF]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
GB [auth AF]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
HB [auth AG]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
HB [auth AG]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HB [auth AG]IPR000754Small ribosomal subunit protein uS9Family
HB [auth AG]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IB [auth AH]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IB [auth AH]IPR001210Small ribosomal subunit protein eS17Family
IB [auth AH]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
JB [auth AI]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
JB [auth AI]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
JB [auth AI]IPR001892Small ribosomal subunit protein uS13Family
JB [auth AI]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
KB [auth AJ]IPR001266Small ribosomal subunit protein eS19Family
KB [auth AJ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KB [auth AJ]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
KB [auth AJ]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LB [auth AK]IPR001848Small ribosomal subunit protein uS10Family
LB [auth AK]IPR027486Small ribosomal subunit protein uS10 domainDomain
LB [auth AK]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
LB [auth AK]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
LB [auth AK]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
MB [auth AL]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
MB [auth AL]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
MB [auth AL]IPR001931Small ribosomal subunit protein eS21Family
NB [auth AM]IPR000630Small ribosomal subunit protein uS8Family
NB [auth AM]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
NB [auth AM]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
OB [auth AN]IPR006032Small ribosomal subunit protein uS12Family
OB [auth AN]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OB [auth AN]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
PB [auth AO]IPR001976Small ribosomal subunit protein eS24Family
PB [auth AO]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
PB [auth AO]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
QB [auth AP]IPR004977Small ribosomal subunit protein eS25Family
QB [auth AP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
RB [auth AQ]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
RB [auth AQ]IPR000892Small ribosomal subunit protein eS26Family
RB [auth AQ]IPR047864Ribosomal protein eS26, conserved siteConserved Site
SB [auth AR]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
SB [auth AR]IPR000592Small ribosomal subunit protein eS27Family
SB [auth AR]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TB [auth AS]IPR028626Ribosomal protein eS28 conserved siteConserved Site
TB [auth AS]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TB [auth AS]IPR000289Small ribosomal subunit protein eS28Family
UB [auth AT]IPR001209Small ribosomal subunit protein uS14Family
UB [auth AT]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
UB [auth AT]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
UB [auth AT]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
VB [auth AV]IPR019775WD40 repeat, conserved siteConserved Site
VB [auth AV]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
VB [auth AV]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
VB [auth AV]IPR045223Small ribosomal subunit protein RACK1-likeFamily
VB [auth AV]IPR001680WD40 repeatRepeat
VB [auth AV]IPR020472G-protein beta WD-40 repeatRepeat
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site