6W0V

The Crystal Structure of the Mutant Nuclease Domain of Pyocin S8 with its Cognate Immunity Protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6w0va_	Alpha and beta proteins (a+b)	His-Me finger endonucleases	His-Me finger endonucleases	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d6w0vb_	All alpha proteins	Acyl carrier protein-like	Colicin E immunity proteins	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HNH-motif	8096535	4000889	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	His-Me finger endonucleases	8096536	3001893	SCOP2 (2022-06-29)
B	SCOP2 Family	Colicin E immunity proteins	8096797	4000862	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Colicin E immunity proteins	8096798	3001814	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF21431	e6w0vA1	A: few secondary structure elements	X: His-Me finger endonucleases (From Homology)	H: His-Me finger endonucleases	T: His-Me finger endonucleases	F: PF21431	ECOD (1.6)
B	PF01320	e6w0vB1	A: alpha bundles	X: ACP-like	H: Colicin E immunity proteins (From Topology)	T: Colicin E immunity proteins	F: PF01320	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21431	Colicin/Pyocin-S2, DNase domain (Col-Pyo_DNase)	Colicin/Pyocin-S2, DNase domain	This entry represents the DNAse domain from colicin/pyocin bacteriocins, such as pyocin-S2 from Pseudomonas aeruginosa and colicin E7/E9 from E. coli. This domain has an alpha/beta fold containing a Zn2+ ion binding site [1-5].	Domain
B	PF01320	Colicin immunity protein / pyocin immunity protein (Colicin_Pyocin)	Colicin immunity protein / pyocin immunity protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Pyocin S8	protein binding binding signaling receptor binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus cellular process cytolysis disruption of cell in another organism biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus cellular process cytolysis disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	-
B	Bacteriocin immunity protein	binding toxic substance binding	cellular metabolic process metabolic process cellular process bacteriocin immunity toxin metabolic process secondary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016128	Pyosin/cloacin translocation domain	Domain
A	IPR036302	Pyosin/cloacin translocation domain superfamily	Homologous Superfamily
A	IPR037146	Colicin/pyocin, DNase domain superfamily	Homologous Superfamily
A	IPR003060	Pyocin S killer protein	Family
A	IPR044925	His-Me finger superfamily	Homologous Superfamily
A	IPR003615	HNH nuclease	Domain
B	IPR000290	Colicin immunity protein/pyocin immunity protein	Family
B	IPR035900	Colicin E immunity protein superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.