6VGE
Crystal structure of the DNA binding domains of human transcription factor ERG, human Runx2 bound to core binding factor beta (Cbfb), in complex with 16mer DNA CAGAGGATGTGGCTTC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | p53-like transcription factors | 8102164 | 3000758 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Core binding factor beta CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00178 | e6vgeA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00178 | ECOD (1.6) |
D | PF00853 | e6vgeD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00853 | ECOD (1.6) |
E [auth G] | PF02312 | e6vgeG1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00178 | Ets-domain (Ets) | Ets-domain | - | Domain | |
PF00853 | Runt domain (Runt) | Runt domain | - | Domain | |
E [auth G] | PF02312 | Core binding factor beta subunit (CBF_beta) | Core binding factor beta subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013761 | Sterile alpha motif/pointed domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR000418 | Ets domain | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR046328 | ETS family | Family | |
IPR003118 | Pointed domain | Domain | |
IPR012346 | p53/RUNT-type transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR013524 | Runt domain | Domain | |
IPR016554 | Runt-related transcription factor RUNX | Family | |
IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR000040 | Acute myeloid leukemia 1 protein (AML1)/Runt | Family | |
IPR027384 | Runx, central domain superfamily | Homologous Superfamily | |
IPR013711 | Runx, C-terminal domain | Domain | |
E [auth G] | IPR003417 | Core-binding factor, beta subunit | Family |
E [auth G] | IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |