6VGE

Crystal structure of the DNA binding domains of human transcription factor ERG, human Runx2 bound to core binding factor beta (Cbfb), in complex with 16mer DNA CAGAGGATGTGGCTTC


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B Superfamilyp53-like transcription factors8102164 3000758 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyCore binding factor beta CBF8042548 3001169 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00178e6vgeA1 A: alpha arraysX: HTHH: HTHT: wingedF: PF00178ECOD (1.6)
DPF00853e6vgeD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: PF00853ECOD (1.6)
E [auth G]PF02312e6vgeG1 A: beta barrelsX: CBF-likeH: Core binding factor beta, CBF (From Topology)T: Core binding factor beta, CBFF: PF02312ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00178Ets-domain (Ets)Ets-domain- Domain
PF00853Runt domain (Runt)Runt domain- Domain
E [auth G]PF02312Core binding factor beta subunit (CBF_beta)Core binding factor beta subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transcriptional regulator ERG
DNA (5'-D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3')---
DNA (5'-D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3')---
Runt-related transcription factor 2
E [auth G]Core-binding factor subunit beta

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP11308
PharosQ13950
E [auth G]PharosQ13951