6VGD

Crystal structure of the DNA binding domain (DBD) of human FLI1 and the complex of the DBD of human Runx2 with core binding factor beta (Cbfb), in complex with 16mer DNA CAGAGGATGTGGCTTC


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWinged helix DNA-binding domain8003108 3000034 SCOP2B (2022-06-29)
DSCOP2B Superfamilyp53-like transcription factors8102164 3000758 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyCore binding factor beta CBF8042548 3001169 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00178e6vgdA1 A: alpha arraysX: HTHH: HTHT: wingedF: PF00178ECOD (1.6)
DPF00853e6vgdD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: PF00853ECOD (1.6)
E [auth G]PF02312e6vgdG1 A: beta barrelsX: CBF-likeH: Core binding factor beta, CBF (From Topology)T: Core binding factor beta, CBFF: PF02312ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00178Ets-domain (Ets)Ets-domain- Domain
PF00853Runt domain (Runt)Runt domain- Domain
E [auth G]PF02312Core binding factor beta subunit (CBF_beta)Core binding factor beta subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Friend leukemia integration 1 transcription factor
DNA (5'-D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3')---
DNA (5'-D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3')---
Runt-related transcription factor 2
E [auth G]Core-binding factor subunit beta

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ01543
PharosQ13950
E [auth G]PharosQ13951