6VCU

Homo sapiens FKBP12 protein bound with APX879 in P32 space group

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6vcub_	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6vcuc_	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6vcua_	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d6vcud_	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Rotamase-like	8035974	3000622	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rotamase-like	8035974	3000622	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rotamase-like	8035974	3000622	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rotamase-like	8035974	3000622	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF00254	e6vcuB1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: PF00254	ECOD (1.6)
C	PF00254	e6vcuC1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: PF00254	ECOD (1.6)
A	PF00254	e6vcuA1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: PF00254	ECOD (1.6)
D	PF00254	e6vcuD1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: PF00254	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Peptidyl-prolyl cis-trans isomerase FKBP1A	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding FK506 binding amide binding organic cyclic compound binding macrolide binding activin receptor binding receptor serine/threonine kinase binding transmembrane receptor protein serine/threonine kinase binding transmembrane transporter binding SMAD binding I-SMAD binding molecular function inhibitor activity molecular function regulator activity signaling receptor inhibitor activity signaling receptor regulator activity	protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process metabolic process cellular process protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling activin receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process negative regulation of cell communication negative regulation of activin receptor signaling pathway negative regulation of cellular process enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction transforming growth factor beta receptor superfamily signaling pathway regulation of activin receptor signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway amyloid fibril formation cellular component organization cellular component organization or biogenesis supramolecular fiber organization regulation of calcium ion transmembrane transporter activity regulation of calcium ion transport regulation of localization intracellular calcium ion homeostasis calcium ion transport localization monoatomic cation homeostasis monoatomic cation transport intracellular monoatomic ion homeostasis regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport inorganic ion transmembrane transport establishment of localization regulation of cation channel activity inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol regulation of molecular function regulation of transmembrane transport chemical homeostasis cellular localization inorganic ion homeostasis transport homeostatic process monoatomic ion transmembrane transport regulation of transmembrane transporter activity calcium ion homeostasis regulation of monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion metal ion transport maintenance of location in cell regulation of transporter activity regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis monoatomic ion transport intracellular chemical homeostasis regulation of metal ion transport regulation of sequestering of calcium ion regulation of monoatomic ion transmembrane transporter activity calcium ion transmembrane import into cytosol regulation of transport sequestering of calcium ion regulation of ryanodine-sensitive calcium-release channel activity cellular homeostasis regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport macromolecule modification peptidyl-amino acid modification peptidyl-proline modification protein modification process protein peptidyl-prolyl isomerization amyloid precursor protein catabolic process regulation of protein metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process amyloid precursor protein metabolic process regulation of metabolic process immune response immune system process regulation of immune response regulation of immune system process developmental process heart development multicellular organismal process cardiac chamber morphogenesis heart trabecula formation animal organ development heart morphogenesis circulatory system development anatomical structure morphogenesis multicellular organism development anatomical structure development anatomical structure formation involved in morphogenesis cardiac chamber development animal organ morphogenesis heart trabecula morphogenesis trabecula formation trabecula morphogenesis system development T cell activation cell activation lymphocyte activation leukocyte activation protein dephosphorylation regulation of phosphatase activity regulation of catalytic activity negative regulation of catalytic activity negative regulation of cellular metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of dephosphorylation phosphorus metabolic process negative regulation of protein metabolic process regulation of dephosphorylation negative regulation of metabolic process dephosphorylation regulation of cellular metabolic process regulation of hydrolase activity regulation of phosphorus metabolic process negative regulation of hydrolase activity negative regulation of phosphoprotein phosphatase activity negative regulation of protein dephosphorylation regulation of protein modification process negative regulation of phosphate metabolic process regulation of phosphoprotein phosphatase activity negative regulation of phosphatase activity negative regulation of macromolecule metabolic process regulation of protein dephosphorylation negative regulation of molecular function negative regulation of phosphorus metabolic process negative regulation of transforming growth factor beta receptor signaling pathway cellular response to growth factor stimulus cellular response to transforming growth factor beta stimulus regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor protein localization regulation of protein localization regulation of cellular localization cellular macromolecule localization macromolecule localization protein maturation by protein folding 'de novo' protein folding ventricular cardiac muscle tissue morphogenesis striated muscle tissue development muscle structure development ventricular cardiac muscle tissue development muscle tissue development muscle organ development cardiac muscle tissue development tissue development muscle tissue morphogenesis tissue morphogenesis cardiac ventricle morphogenesis cardiac muscle tissue morphogenesis cardiac ventricle development muscle organ morphogenesis regulation of protein binding positive regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding	membrane-bounded organelle intracellular anatomical structure organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane-bounded organelle intracellular anatomical structure organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane Z disc sarcomere I band intracellular non-membrane-bounded organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network sarcoplasmic reticulum membrane organelle membrane endoplasmic reticulum membrane cytoplasmic side of membrane side of membrane cytosol protein-containing complex membrane protein complex ryanodine receptor complex transporter complex cell periphery endoplasmic reticulum protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex plasma membrane cation channel complex transmembrane transporter complex calcium channel complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
A, B, C, D	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P62942	esophageal squamous cell carcinoma Liver Cirrhosis, Experimental medulloblastoma Pick disease renal cell carcinoma astrocytic tumor breast carcinoma lymphangioma malignant mesothelioma osteosarcoma tuberculosis atopic eczema cystic fibrosis glioblastoma kidney angiomyolipoma esophageal squamous cell carcinoma Liver Cirrhosis, Experimental medulloblastoma Pick disease renal cell carcinoma astrocytic tumor breast carcinoma lymphangioma malignant mesothelioma osteosarcoma tuberculosis atopic eczema cystic fibrosis glioblastoma kidney angiomyolipoma lung lymphangioleiomyomatosis mantle cell lymphoma psoriasis tuberous sclerosis bipolar disorder disappearing bone disease malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.