6V8W
CDYL2 chromodomain in complex with a synthetic peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
AA [auth N] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
CA [auth O] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
EA [auth P] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
GA [auth Q] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
I [auth E] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
IA [auth R] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
K [auth F] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
KA [auth S] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
MA [auth T] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
O [auth H] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
OA [auth U] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
Q [auth I] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
QA [auth V] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
S [auth J] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
SA [auth W] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
U [auth K] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
UA [auth X] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
W [auth L] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
WA [auth Y] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
Y [auth M] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
YA [auth Z] | SCOP2B Superfamily | Chromo domain-like | 8062263 | 3000161 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Chromo | e6v8wA1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
AA [auth N] | Chromo | e6v8wN1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
C [auth B] | Chromo | e6v8wB1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
CA [auth O] | Chromo | e6v8wO1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
E [auth C] | Chromo | e6v8wC1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
EA [auth P] | Chromo | e6v8wP1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
G [auth D] | Chromo | e6v8wD1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
GA [auth Q] | Chromo | e6v8wQ1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
I [auth E] | Chromo | e6v8wE1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
IA [auth R] | Chromo | e6v8wR1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
K [auth F] | Chromo | e6v8wF1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
KA [auth S] | Chromo | e6v8wS1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
M [auth G] | Chromo | e6v8wG1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
MA [auth T] | Chromo | e6v8wT1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
O [auth H] | Chromo | e6v8wH1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
OA [auth U] | Chromo | e6v8wU1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
Q [auth I] | Chromo | e6v8wI1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
QA [auth V] | Chromo | e6v8wV1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
S [auth J] | Chromo | e6v8wJ1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
SA [auth W] | Chromo | e6v8wW1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
U [auth K] | Chromo | e6v8wK1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
UA [auth X] | Chromo | e6v8wX1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
W [auth L] | Chromo | e6v8wL1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
WA [auth Y] | Chromo | e6v8wY1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
Y [auth M] | Chromo | e6v8wM1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
YA [auth Z] | Chromo | e6v8wZ1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: Chromo | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00385 | Chromo (CHRromatin Organisation MOdifier) domain (Chromo) | Chromo (CHRromatin Organisation MOdifier) domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Chromodomain Y-like protein 2 |
| - | ||
IVA-PHE-ALA-PHE-5T3-SER-NH2 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001753 | Enoyl-CoA hydratase/isomerase | Family | |
IPR000953 | Chromo/chromo shadow domain | Domain | |
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR023780 | Chromo domain | Domain | |
IPR016197 | Chromo-like domain superfamily | Homologous Superfamily | |
IPR014748 | Enoyl-CoA hydratase, C-terminal | Homologous Superfamily | |
IPR023779 | Chromo domain, conserved site | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
5T3 | Parent Component: LYS | |
IVA | ||
NH2 | AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | :