6TFL
Lsm protein (SmAP) from Halobacterium salinarum
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
M | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins SNRNP | 8102055 | 4001809 | SCOP2 (2022-06-29) |
M | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2 (2022-06-29) |
N | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8102056 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01423 | e6tflA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
C | PF01423 | e6tflC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
D | PF01423 | e6tflD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
E | PF01423 | e6tflE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
F | PF01423 | e6tflF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
G | PF01423 | e6tflG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
H | PF01423 | e6tflH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
J | PF01423 | e6tflJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
K | PF01423 | e6tflK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
M | PF01423 | e6tflM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
N | PF01423 | e6tflN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
B | PF01423 | e6tflB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
I | PF01423 | e6tflI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
L | PF01423 | e6tflL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
RNA-binding protein Lsm | - | - |