6T3U
PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8035040 | 3000471 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | GAF domain-like | 8035039 | 3000080 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | GAF domain-like | 8035039 | 3000080 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8035040 | 3000471 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF01590 | e6t3uB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
A [auth B] | PF08446 | e6t3uB2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
B [auth A] | PF01590 | e6t3uA2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
B [auth A] | PF08446 | e6t3uA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (utative) |
A [auth B] | 3.30.450.40 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | GAF domain | CATH (utative) |
B [auth A] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (utative) |
B [auth A] | 3.30.450.40 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | GAF domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain |
A [auth B], B [auth A] | PF08446 | PAS fold (PAS_2) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR013515 | Phytochrome, central region | Domain |
A [auth B], B [auth A] | IPR004358 | Signal transduction histidine kinase-related protein, C-terminal | Domain |
A [auth B], B [auth A] | IPR003594 | Histidine kinase/HSP90-like ATPase | Domain |
A [auth B], B [auth A] | IPR036097 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR043150 | Phytochrome, PHY domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR013654 | PAS fold-2 | Domain |
A [auth B], B [auth A] | IPR035965 | PAS domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR005467 | Histidine kinase domain | Domain |
A [auth B], B [auth A] | IPR003018 | GAF domain | Domain |
A [auth B], B [auth A] | IPR029016 | GAF-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR016132 | Phytochrome chromophore attachment domain | Domain |