6SUV

Horse cytochrome c complexed by octa-anionic calixarene

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth CaC]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
D [auth DaD]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
G [auth GaG]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
H [auth HaH]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
A [auth AaA]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
B [auth BaB]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
E [auth EaE]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
F [auth FaF]	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth CaC]	PF00034	e6suvCaC1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
D [auth DaD]	PF00034	e6suvDaD1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
G [auth GaG]	PF00034	e6suvGaG1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
H [auth HaH]	PF00034	e6suvHaH1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
A [auth AaA]	PF00034	e6suvAaA1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
B [auth BaB]	PF00034	e6suvBaB1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
E [auth EaE]	PF00034	e6suvEaE1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
F [auth FaF]	PF00034	e6suvFaF1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	Cytochrome c	binding lipid binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	aerobic respiration cellular respiration aerobic electron transport chain oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy mitochondrial electron transport, cytochrome c to oxygen respiratory electron transport chain metabolic process cellular process mitochondrial ATP synthesis coupled electron transport aerobic respiration cellular respiration aerobic electron transport chain oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy mitochondrial electron transport, cytochrome c to oxygen respiratory electron transport chain metabolic process cellular process mitochondrial ATP synthesis coupled electron transport mitochondrial electron transport, ubiquinol to cytochrome c regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of biological process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process organic substance metabolic process regulation of proteolysis proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process protein metabolic process regulation of cysteine-type endopeptidase activity regulation of biological process organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity biological regulation positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis macromolecule metabolic process regulation of metabolic process apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process cytochrome complex assembly protein-tetrapyrrole linkage protein-containing complex organization cytochrome c-heme linkage cellular component organization cellular component biogenesis cellular component assembly macromolecule modification protein-heme linkage protein-containing complex assembly cellular component organization or biogenesis protein modification process positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of cysteine-type endopeptidase activity involved in apoptotic process	membrane respirasome cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle mitochondrial intermembrane space mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle envelope lumen intracellular organelle membrane respirasome cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle mitochondrial intermembrane space mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle envelope lumen intracellular organelle organelle envelope organelle lumen organelle mitochondrial envelope protein-containing complex cytochrome complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR009056	Cytochrome c-like domain	Domain
A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], A [auth AaA], B [auth BaB], C [auth CaC], D [auth DaD], E [auth EaE], F [auth FaF], G [auth GaG], H [auth HaH]	IPR002327	Cytochrome c, class IA/ IB	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.