6SGC

Rabbit 80S ribosome stalled on a poly(A) tail


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth G1]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
X [auth X1]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
FB [auth X2]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
J [auth J1]SCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2022-06-29)
L [auth L1]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
N [auth N1]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
R [auth R1]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
T [auth T1]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
U [auth U1]SCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-06-29)
V [auth V1]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
AA [auth a1]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
C [auth C1]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
DA [auth d1]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
EA [auth e1]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
FA [auth f1]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
HA [auth h1]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
KA [auth B2]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
MA [auth D2]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
RA [auth I2]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
SA [auth J2]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
VA [auth N2]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
XA [auth P2]SCOP2B SuperfamilyRibosomal protein L228097828 3001078 SCOP2B (2022-06-29)
DB [auth V2]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
GB [auth Y2]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-06-29)
HB [auth Z2]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-06-29)
IB [auth a2]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-06-29)
KB [auth c2]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
MB [auth e2]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-06-29)
NB [auth f2]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
OB [auth g2]SCOP2B SuperfamilyRibosomal protein L34e-like8053543 3002203 SCOP2B (2022-06-29)
QB [auth i2]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
SB [auth k2]SCOP2B SuperfamilyRibosomal L38e protein-like8093716 3002206 SCOP2B (2022-06-29)
TB [auth l2]SCOP2 Familyribosomal protein l39e8095596 4001518 SCOP2 (2022-06-29)
TB [auth l2]SCOP2 SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2 (2022-06-29)
XB [auth p2]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)
FC [auth B]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth G1]PF00177e6sgcG11 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
O [auth O1]PF08069e6sgcO12 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
O [auth O1]PF00312e6sgcO11 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
X [auth X1]PF00410e6sgcX11 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
X [auth X1]PF00410e6sgcX12 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
CB [auth U2]PF01776e6sgcU21 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
FB [auth X2]PF00276,PF03939e6sgcX21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
J [auth J1]PF01201e6sgcJ11 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
K [auth K1]PF00163,PF01479e6sgcK11 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
L [auth L1]PF03501e6sgcL11 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
M [auth M1]PF00366,PF16205e6sgcM11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
N [auth N1]PF01248e6sgcN11 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
P [auth P1]PF00411e6sgcP11 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
Q [auth Q1]PF00203e6sgcQ11 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
R [auth R1]PF00380e6sgcR11 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
S [auth S1]PF00833e6sgcS11 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
B [auth B1]PF00318e6sgcB11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
T [auth T1]PF00416e6sgcT11 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
U [auth U1]PF01090e6sgcU11 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
V [auth V1]PF00338e6sgcV11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
W [auth W1]PF01249e6sgcW11 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
Y [auth Y1]PF00164e6sgcY11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
Z [auth Z1]PF01282e6sgcZ11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
AA [auth a1]PF03297e6sgca11 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
BA [auth b1]PF01283e6sgcb11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
CA [auth c1]PF01667e6sgcc11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
C [auth C1]PF01015e6sgcC12 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
C [auth C1]PF01015e6sgcC11 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
DA [auth d1]PF01200e6sgcd11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
EA [auth e1]PF00253e6sgce11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
FA [auth f1]PF04758e6sgcf11 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
GA [auth g1]PF01599e6sgcg11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
HA [auth h1]PF00400e6sgch11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
JA [auth A2]PF00181e6sgcA21 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
JA [auth A2]PF03947e6sgcA22 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
KA [auth B2]PF00297e6sgcB21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
LA [auth C2]PF00573e6sgcC22 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
LA [auth C2]PF14374e6sgcC21 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
MA [auth D2]PF14204,PF17144e6sgcD21 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
D [auth D1]PF03719e6sgcD12 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
D [auth D1]PF00333e6sgcD11 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
D [auth D1]PF00333e6sgcD13 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
NA [auth E2]PF01159,PF03868e6sgcE21 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
OA [auth F2]PF00327,PF08079e6sgcF21 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
PA [auth G2]PF01248e6sgcG21 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QA [auth H2]PF00347e6sgcH22 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
RA [auth I2]PF00252e6sgcI21 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
SA [auth J2]PF00281,PF00673e6sgcJ21 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
TA [auth L2]PF01294e6sgcL21 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
UA [auth M2]PF00467,PF01929e6sgcM21 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
VA [auth N2]PF00827e6sgcN21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
WA [auth O2]PF00572e6sgcO21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
E [auth E1]PF00189e6sgcE11 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
E [auth E1]PF07650e6sgcE12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
XA [auth P2]PF00237e6sgcP21 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
YA [auth Q2]PF17135e6sgcQ21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
ZA [auth R2]PF01280e6sgcR22 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
ZA [auth R2]PF01280e6sgcR21 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
AB [auth S2]F_UNCLASSIFIEDe6sgcS22 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
AB [auth S2]PF01775e6sgcS21 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
BB [auth T2]PF01157e6sgcT21 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
DB [auth V2]PF00238e6sgcV21 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
EB [auth W2]PF01246e6sgcW21 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
GB [auth Y2]PF16906e6sgcY21 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
F [auth F1]PF00900e6sgcF12 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
F [auth F1]PF00467,PF16121e6sgcF11 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
F [auth F1]PF00900,PF01479,PF08071e6sgcF13 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
HB [auth Z2]PF00467,PF01777e6sgcZ21 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
IB [auth a2]PF00828e6sgca21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
JB [auth b2]PF01779e6sgcb21 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
KB [auth c2]PF01248e6sgcc21 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
LB [auth d2]PF01198e6sgcd21 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
MB [auth e2]PF01655e6sgce21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
NB [auth f2]PF01247e6sgcf21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
OB [auth g2]PF01199e6sgcg21 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
PB [auth h2]PF00831e6sgch21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
QB [auth i2]PF01158e6sgci21 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
RB [auth j2]PF01907e6sgcj21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
SB [auth k2]PF01781e6sgck21 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
TB [auth l2]PF00832e6sgcl21 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
UB [auth m2]PF01020e6sgcm21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
VB [auth n2]PF05162e6sgcn21 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
WB [auth o2]PF00935e6sgco21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
XB [auth p2]PF01780e6sgcp21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
YB [auth r2]PF01778e6sgcr21 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
ZB [auth s2]PF00466e6sgcs21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
ZB [auth s2]PF17777e6sgcs22 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
AC [auth t2]PF00298e6sgct21 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
AC [auth t2]PF03946e6sgct22 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
H [auth H1]PF01092e6sgcH11 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
FC [auth B]PF00687e6sgcB1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
FC [auth B]PF00687e6sgcB2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
I [auth I1]PF01251e6sgcI12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth G1]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
O [auth O1]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
O [auth O1]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
X [auth X1]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
FB [auth X2]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
FB [auth X2]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
J [auth J1]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
K [auth K1]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
K [auth K1]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
L [auth L1]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
M [auth M1]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth M1]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
N [auth N1]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Q [auth Q1]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
R [auth R1]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
S [auth S1]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
T [auth T1]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
U [auth U1]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
V [auth V1]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
AA [auth a1]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
CA [auth c1]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
C [auth C1]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
DA [auth d1]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
EA [auth e1]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
FA [auth f1]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
GA [auth g1]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
HA [auth h1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth A2]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
JA [auth A2]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
KA [auth B2]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
MA [auth D2]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
MA [auth D2]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
NA [auth E2]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
NA [auth E2]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
OA [auth F2]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
OA [auth F2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
QA [auth H2]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
RA [auth I2]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
SA [auth J2]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
SA [auth J2]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
UA [auth M2]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
VA [auth N2]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
E [auth E1]PF07650KH domain (KH_2)KH domain- Domain
E [auth E1]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
XA [auth P2]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
BB [auth T2]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
DB [auth V2]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
GB [auth Y2]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
GB [auth Y2]PF00467KOW motif (KOW)KOW motif- Family
F [auth F1]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
F [auth F1]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
F [auth F1]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
F [auth F1]PF00467KOW motif (KOW)KOW motif- Family
HB [auth Z2]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
HB [auth Z2]PF00467KOW motif (KOW)KOW motif- Family
IB [auth a2]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
KB [auth c2]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LB [auth d2]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
MB [auth e2]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
NB [auth f2]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
OB [auth g2]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PB [auth h2]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
QB [auth i2]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
RB [auth j2]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
SB [auth k2]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
TB [auth l2]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
VB [auth n2]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
WB [auth o2]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
XB [auth p2]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
YB [auth r2]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
AC [auth t2]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
AC [auth t2]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
H [auth H1]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
FC [auth B]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
I [auth I1]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth G1]Ribosomal protein S5- - -
O [auth O1]Ribosomal_S13_N domain-containing protein- - -
X [auth X1]Ribosomal protein S15a- - -
CB [auth U2]eL22---
FB [auth X2]Ribosomal_L23eN domain-containing protein- - -
A [auth A1]18S ribosomal RNA---
J [auth J1]40S ribosomal protein S8- - -
K [auth K1]Ribosomal protein S9 (Predicted)- - -
L [auth L1]S10_plectin domain-ontaining protein- - -
M [auth M1]Ribosomal protein S11- - -
N [auth N1]40S ribosomal protein S12- - -
P [auth P1]uS11---
Q [auth Q1]uS19- - -
R [auth R1]Ribosomal protein S16- - -
S [auth S1]eS17- - -
B [auth B1]uS2---
T [auth T1]eS13- - -
U [auth U1]eS19- - -
V [auth V1]Ribosomal_S10 domain-containing protein- - -
W [auth W1]eS21---
Y [auth Y1]uS12---
Z [auth Z1]eS24---
AA [auth a1]eS25- - -
BA [auth b1]eS26---
CA [auth c1]40S ribosomal protein S27- - -
C [auth C1]40S ribosomal protein S3a- - -
DA [auth d1]Ribosomal protein S28- - -
EA [auth e1]uS14- - -
FA [auth f1]40S ribosomal protein S30- - -
GA [auth g1]Ribosomal protein S27a- - -
HA [auth h1]WD_REPEATS_REGION domain-containing protein- - -
IA [auth i1]polyA mRNA---
JA [auth A2]Ribosomal protein L8- - -
KA [auth B2]uL3- - -
LA [auth C2]uL4---
MA [auth D2]60S ribosomal protein L5---
D [auth D1]uS5---
NA [auth E2]60S ribosomal protein L6- - -
OA [auth F2]uL30
PA [auth G2]eL8---
QA [auth H2]uL6- - -
RA [auth I2]60S ribosomal protein L10- - -
SA [auth J2]Ribosomal protein L11- - -
TA [auth L2]eL13---
UA [auth M2]Ribosomal protein L14- - -
VA [auth N2]Ribosomal protein L15- - -
WA [auth O2]uL13---
E [auth E1]uS5- - -
XA [auth P2]uL22---
YA [auth Q2]eL18---
ZA [auth R2]eL19---
AB [auth S2]eL20---
BB [auth T2]eL21- - -
DB [auth V2]Ribosomal protein L23- - -
EB [auth W2]TRASH domain-containing protein- - -
GB [auth Y2]Ribosomal protein L26- - -
F [auth F1]40S ribosomal protein S4- - -
HB [auth Z2]60S ribosomal protein L27- - -
IB [auth a2]Ribosomal_L18e/L15P domain-containing protein- - -
JB [auth b2]eL29---
KB [auth c2]Ribosomal_L7Ae domain-containing protein- - -
LB [auth d2]eL31- - -
MB [auth e2]eL32- - -
NB [auth f2]eL33- - -
OB [auth g2]eL34---
PB [auth h2]uL29- - -
QB [auth i2]60S ribosomal protein L36- - -
RB [auth j2]Ribosomal protein L37- - -
SB [auth k2]eL38- - -
TB [auth l2]eL39
UB [auth m2]eL40---
VB [auth n2]60s ribosomal protein l41- - -
WB [auth o2]eL42- - -
XB [auth p2]eL43- - -
YB [auth r2]Ribosomal_L28e domain-containing protein- - -
ZB [auth s2]uL10---
AC [auth t2]Ribosomal protein L12- - -
H [auth H1]40S ribosomal protein S6- - -
BC [auth 54]28S ribosomal RNA---
CC [auth 74]5S ribosomal RNA---
DC [auth 84]5.8S ribosomal RNA---
EC [auth XX]poly-lysine nascent chain---
FC [auth B]Ribosomal protein- - -
GC [auth 23],
HC [auth 33]
tRNA (Lys3)---
I [auth I1]40S ribosomal protein S7- - -