Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8039342 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyWD40 repeat-like8051194 3001694 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyWD40 repeat-like8052530 3001694 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyWD40 repeat-like8052530 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHistonee6r8yA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EHistonee6r8yE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
BHistone_1e6r8yB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CHistone_1e6r8yC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GHistone_1e6r8yG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
HHistonee6r8yH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
DHistonee6r8yD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
FHistone_1e6r8yF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
KCPSF_A_Ne6r8yK1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
KMMS1_N_Ne6r8yK2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
KCPSF_A_Ce6r8yK3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
LANAPC4_WD40_14e6r8yL1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_14ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, H
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.1
Histone H4
C, G
Histone H2A type 1-B/E
D, H
Histone H2B type 1-J
Histone H4
Human alpha-satellite DNA (145-MER)---
Human alpha-satellite DNA (145-MER) with a 6-4PP at positions 95-96---
DNA damage-binding protein 1
DNA damage-binding protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR018846Cleavage/polyadenylation specificity factor, A subunit, N-terminalDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
IPR019775WD40 repeat, conserved siteConserved Site
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR033312DNA damage-binding protein 2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP68431
PharosP62805
C, G
PharosP04908
D, H
PharosP06899
PharosP62805
PharosQ16531
PharosQ92466