6Q2V

Crystal structure of SPOC domain of human PHD-finger protein 3 (PHF3)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e6q2vB1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6q2vA1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6q2vC1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6q2vD1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e6q2vE1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
F	UNK_F_TYPE	e6q2vF1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)
G	F_UNCLASSIFIED	e6q2vG1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: F_UNCLASSIFIED	ECOD (1.6)
H	UNK_F_TYPE	e6q2vH1	A: beta barrels	X: SPOC domain-like	H: SPOC domain-related	T: SPOC domain	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF07744	SPOC domain (SPOC)	SPOC domain	The SPOC (Spen paralogue and orthologue C-terminal) domain is involved in developmental signalling [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	PHD finger protein 3	cation binding ion binding binding metal ion binding small molecule binding	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001965	Zinc finger, PHD-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019787	Zinc finger, PHD-finger	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012921	Spen paralogue and orthologue SPOC, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003618	Transcription elongation factor S-II, central domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036575	Transcription elongation factor S-II, central domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q92576	Alcoholic Intoxication, Chronic glioblastoma myopathy progressive supranuclear palsy atypical teratoid rhabdoid tumor large cell medulloblastoma osteosarcoma psoriasis dermatomyositis malignant mesothelioma ovarian cancer Tourette syndrome

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.