6Q1F

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q], KA [auth R], LA [auth x], MA [auth y], NA [auth z], OA [auth 1], PA [auth 2], QA [auth 3], RA [auth 4]	PF17086	Small capsid protein of Herpesviridae (HV_small_capsid)	Small capsid protein of Herpesviridae	-	Family
SA [auth 5], TA [auth S], UA [auth T], VA [auth U], WA [auth V]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	PF06070	Herpesvirus large structural phosphoprotein UL32 (Herpes_UL32)	Herpesvirus large structural phosphoprotein UL32	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q], KA [auth R], LA [auth x], MA [auth y], NA [auth z], OA [auth 1], PA [auth 2], QA [auth 3], RA [auth 4]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
SA [auth 5], TA [auth S], UA [auth T], VA [auth U], WA [auth V]	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	Triplex capsid protein 2	structural molecule activity	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	Large structural phosphoprotein	structural molecule activity	-	virion component viral tegument

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	IPR000912	Herpesvirus major capsid protein	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q], KA [auth R], LA [auth x], MA [auth y], NA [auth z], OA [auth 1], PA [auth 2], QA [auth 3], RA [auth 4]	IPR031385	Small capsid protein, Herpesviridae	Family
SA [auth 5], TA [auth S], UA [auth T], VA [auth U], WA [auth V]	IPR004999	Herpesvirus capsid shell protein 1	Family
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	IPR002690	Herpesvirus capsid protein 2	Family
AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	IPR010340	Herpesvirus UL11/UL32	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.