Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth G]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
H [auth K]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
E [auth H]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
F [auth I]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
I [auth M]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
J [auth N]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00400e6pwwA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BPF00400e6pwwB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
CPF00856e6pwwC1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: PF00856ECOD (1.6)
D [auth G]PF00125e6pwwG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
H [auth K]PF00125e6pwwK1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
E [auth H]PF15511e6pwwH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
M [auth L]PF15511e6pwwL1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
F [auth I]PF00125,PF16211e6pwwI1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
I [auth M]PF00125,PF16211e6pwwM1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
J [auth N]PF00125e6pwwN1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
G [auth J]PF00125e6pwwJ1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00856SET domain (SET)SET domain- Family
D [auth G],
H [auth K]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
E [auth H],
M [auth L]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
F [auth I],
I [auth M]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
F [auth I],
I [auth M]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
G [auth J],
J [auth N]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Retinoblastoma-binding protein 5
WD repeat-containing protein 5
Histone-lysine N-methyltransferase 2A
D [auth G],
H [auth K]
Histone H3.2 -
E [auth H],
M [auth L]
Histone H4 -
F [auth I],
I [auth M]
Histone H2A type 1 -
G [auth J],
J [auth N]
Histone H2B 1.1 -
K [auth O]DNA (146-MER)---
L [auth P]DNA (146-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR037850Retinoblastoma-binding protein 5/Swd1Family
IPR001680WD40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR020472G-protein beta WD-40 repeatRepeat
IPR001965Zinc finger, PHD-typeDomain
IPR046341SET domain superfamilyHomologous Superfamily
IPR001214SET domainDomain
IPR044133KMT2A, PHD domain 3Domain
IPR003616Post-SET domainDomain
IPR034732Extended PHD (ePHD) domainDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR003888FY-rich, N-terminalConserved Site
IPR001487BromodomainDomain
IPR002857Zinc finger, CXXC-typeDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR041958KMT2A, ePHD domainDomain
IPR047219Histone-lysine N-methyltransferase 2A/2B, SET domainDomain
IPR042025KMT2A, PHD domain 2Domain
IPR003889FY-rich, C-terminalConserved Site
IPR016569Methyltransferase, trithoraxFamily
IPR042023KMT2A, PHD domain 1Domain
D [auth G],
H [auth K]
IPR009072Histone-foldHomologous Superfamily
D [auth G],
H [auth K]
IPR007125Histone H2A/H2B/H3Domain
D [auth G],
H [auth K]
IPR000164Histone H3/CENP-AFamily
E [auth H],
M [auth L]
IPR009072Histone-foldHomologous Superfamily
E [auth H],
M [auth L]
IPR001951Histone H4Family
E [auth H],
M [auth L]
IPR035425CENP-T/Histone H4, histone foldDomain
E [auth H],
M [auth L]
IPR019809Histone H4, conserved siteConserved Site
E [auth H],
M [auth L]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
F [auth I],
I [auth M]
IPR009072Histone-foldHomologous Superfamily
F [auth I],
I [auth M]
IPR007125Histone H2A/H2B/H3Domain
F [auth I],
I [auth M]
IPR002119Histone H2AFamily
F [auth I],
I [auth M]
IPR032454Histone H2A, C-terminal domainDomain
F [auth I],
I [auth M]
IPR032458Histone H2A conserved siteConserved Site
G [auth J],
J [auth N]
IPR009072Histone-foldHomologous Superfamily
G [auth J],
J [auth N]
IPR007125Histone H2A/H2B/H3Domain
G [auth J],
J [auth N]
IPR000558Histone H2BFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ15291
PharosP61964
PharosQ03164