6PPD

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 0]	PF06112	e6ppd01	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: PF06112	ECOD (1.6)
C [auth 2]	PF06112	e6ppd21	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: PF06112	ECOD (1.6)
F [auth 3]	PF06112	e6ppd31	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: PF06112	ECOD (1.6)
H [auth A]	PF06112	e6ppdA1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: PF06112	ECOD (1.6)
O [auth 1]	PF06112	e6ppd11	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: PF06112	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	PF06112	Gammaherpesvirus capsid protein (Herpes_capsid)	Gammaherpesvirus capsid protein	-	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
I [auth 5], L [auth b]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
J [auth 6], K [auth 7], M [auth c], N [auth d]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
I [auth 5], L [auth b]	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
J [auth 6], K [auth 7], M [auth c], N [auth d]	Triplex capsid protein 2	structural molecule activity	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]	IPR009299	Gammaherpesvirus capsid	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR000912	Herpesvirus major capsid protein	Family
B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
I [auth 5], L [auth b]	IPR004999	Herpesvirus capsid shell protein 1	Family
J [auth 6], K [auth 7], M [auth c], N [auth d]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.