6OIS
CryoEM structure of Arabidopsis DR complex (DMS3-RDM1)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09187 | e6oisA1 | A: alpha arrays | X: Hypothetical protein At3g22680 (From Topology) | H: Hypothetical protein At3g22680 (From Topology) | T: Hypothetical protein At3g22680 | F: PF09187 | ECOD (1.6) |
B | PF09187 | e6oisB1 | A: alpha arrays | X: Hypothetical protein At3g22680 (From Topology) | H: Hypothetical protein At3g22680 (From Topology) | T: Hypothetical protein At3g22680 | F: PF09187 | ECOD (1.6) |
C | F_UNCLASSIFIED | e6oisC1 | A: a+b duplicates or obligate multimers | X: Smc hinge domain (From Topology) | H: Smc hinge domain (From Topology) | T: Smc hinge domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e6oisD1 | A: a+b duplicates or obligate multimers | X: Smc hinge domain (From Topology) | H: Smc hinge domain (From Topology) | T: Smc hinge domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e6oisE1 | A: a+b duplicates or obligate multimers | X: Smc hinge domain (From Topology) | H: Smc hinge domain (From Topology) | T: Smc hinge domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e6oisF1 | A: a+b duplicates or obligate multimers | X: Smc hinge domain (From Topology) | H: Smc hinge domain (From Topology) | T: Smc hinge domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.690 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | RDM1 protein domain | CATH (utative) |
B | 1.20.120.690 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | RDM1 protein domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09187 | RNA-directed DNA methylation 1 (RdDM_RDM1) | RNA-directed DNA methylation 1 | This family of plant proteins includes RDM1 from Arabidopsis, which is a component of the RNA-directed DNA methylation (RdDM) effector complex and may have a role in linking siRNA production with pre-existing or de novo cytosine methylation [1]. As ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015270 | Protein RDM1, plant | Family | |
IPR036319 | RDM1 superfamily | Homologous Superfamily |