Structure of parvovirus B19 decorated with Fab molecules from a human antibody
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2 Family | Parvovirinae-like VP | 8101672 | 4003479 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ssDNA viruses | 8101673 | 3000931 | SCOP2 (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF00740 | e6nn3A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00740 | ECOD (1.6) |
B [auth H] | PF07686 | e6nn3H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth L] | PF07686 | e6nn3L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|
B [auth H] | Fab 860-55D | VH | Homo sapiens (human) | IGHV4-31*02, IGHV4-31*03, IGHJ5*02 | V-DOMAIN VH | IG | FV-HEAVY_LAMBDA | IMGT (202417-0) |
C [auth L] | Fab 860-55D | V-LAMBDA | Homo sapiens (human) | IGLV3-1*01, IGLJ2*01, IGLJ3*01 | V-DOMAIN V-LAMBDA | IG | FV-HEAVY_LAMBDA | IMGT (202417-0) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
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B [auth H] | Heavy Chain | IGHV4 | - | vp2 of b19 parvovirus | SAbDab (2024-05-03) |
C [auth L] | Light Chain | IGLV3 | Lambda | vp2 of b19 parvovirus | SAbDab (2024-05-03) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| VP2 of B19 parvovirus | | - | |
B [auth H] | Fab monoclonal antibody 860-55D, heavy chain | - | - | - |
C [auth L] | Fab monoclonal antibody 860-55D, light chain | - | - | - |