6KCO

Shuguo PWWP in complex with ssDNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8095359	3000404	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00855	e6kcoA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
B	PF00855	e6kcoB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
C	PF00855	e6kcoC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
D	PF00855	e6kcoD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
E	PF00855	e6kcoE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
F	PF00855	e6kcoF1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
G	PF00855	e6kcoG1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
H	PF00855	e6kcoH1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
I	PF00855	e6kcoI1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
J	PF00855	e6kcoJ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
K	PF00855	e6kcoK1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
L	PF00855	e6kcoL1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
M	PF00855	e6kcoM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
N	PF00855	e6kcoN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
O	PF00855	e6kcoO1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)
P	PF00855	e6kcoP1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00855	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00855	PWWP domain (PWWP)	PWWP domain	The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif [1]. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic c ...	The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif [1]. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic cavity created by this domain within the full-length protein, Pdp1, abolishes the interaction o f the protein with H4K20me3. In fission yeast, Set9 is the sole enzyme that catalyses all three states of H4K20me, and Set9-mediated H4K20me is required for efficient recruitment of checkpoint protein Crb2 to sites of DNA damage. The methylation of H4K20 is involved in a diverse array of cellular processes, such as organising higher-order chromatin, maintaining genome stability, and regulating cell-cycle progression [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	LD23804p	-	protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization chromatin remodeling cellular process cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
AA [auth 3L], BA [auth 9N], CA [auth 6A], DA [auth 3B], EA [auth 7C], AA [auth 3L], BA [auth 9N], CA [auth 6A], DA [auth 3B], EA [auth 7C], FA [auth 8K], Q [auth 1O], R [auth 2M], S [auth 1P], T [auth 1H], U [auth 4D], V [auth 7E], W [auth 6F], X [auth 2G], Y [auth 5I], Z [auth 4J]	DNA (5'-D(TPCPCPCP*T)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR021567	Lens epithelium-derived growth factor, integrase-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036218	HIV integrase-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000313	PWWP domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR035441	TFIIS/LEDGF domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.