6K3A
Crystal structure of human PCNA in complex with DNMT1 PIP box motif.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00705 | e6k3aA2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
A | PF02747 | e6k3aA1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
C | PF00705 | e6k3aC2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
C | PF02747 | e6k3aC1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
E | PF00705 | e6k3aE1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
E | PF02747 | e6k3aE2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) | |
C | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) | |
E | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046938 | DNA clamp superfamily | Homologous Superfamily | |
IPR022648 | Proliferating cell nuclear antigen, PCNA, N-terminal | Domain | |
IPR000730 | Proliferating cell nuclear antigen, PCNA | Family | |
IPR022649 | Proliferating cell nuclear antigen, PCNA, C-terminal | Domain | |
IPR022659 | Proliferating cell nuclear antigen, PCNA, conserved site | Conserved Site | |
IPR001025 | Bromo adjacent homology (BAH) domain | Domain | |
IPR018117 | DNA methylase, C-5 cytosine-specific, active site | Active Site | |
IPR002857 | Zinc finger, CXXC-type | Domain | |
IPR022702 | DNA (cytosine-5)-methyltransferase 1, replication foci domain | Domain | |
IPR031303 | DNA methylase, C-5 cytosine-specific, conserved site | Conserved Site | |
IPR017198 | DNA (cytosine-5)-methyltransferase 1-like | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR010506 | DMAP1-binding domain | Domain | |
IPR043151 | Bromo adjacent homology (BAH) domain superfamily | Homologous Superfamily | |
IPR001525 | C-5 cytosine methyltransferase | Family |