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Complex structure of MAb 4.2-scFv with louping ill virus envelope protein Domain III External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2 Family Class II viral fusion proteins C-terminal domain 8098157 4007569 SCOP2 (2022-06-29) A SCOP2 Superfamily E set domains 8098158 3000070 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF02832 e6j5dA1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF02832 ECOD (1.6) B [auth H] PF07686 e6j5dH1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6) C [auth L] PF07686 e6j5dL1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6)
Chain Protein Name Description Organism Name Gene Allele Name(s) Domain Name(s) Receptor Type Receptor Description Provenance Source B [auth H] mAb 4.2, broadly neutralizing antibody VH Mus musculus (house mouse) IGHV1-77*01, IGHV1-75*01, IGHJ2*01 V-DOMAIN VH IG VH-V-KAPPA IMGT (202416-0) C [auth L] mAb 4.2, broadly neutralizing antibody V-KAPPA Mus musculus (house mouse) IGKV12-41*02, IGKV12-41*01, IGKJ1*01 V-DOMAIN V-KAPPA IG VH-V-KAPPA IMGT (202416-0)
Chain Chain Class Chain Subclass Chain Type Antigen Name(s) Provenance Source B [auth H] Heavy Chain IGHV1 - envelope SAbDab (2024-04-26) C [auth L] Light Chain IGKV12 Kappa envelope SAbDab (2024-04-26)
Chains Polymer Molecular Function Biological Process Cellular Component Envelope B [auth H] antibody heavy chain - - - C [auth L] antibody light chain - - -
Chains Accession Name Type IPR038345 Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily Homologous Superfamily IPR026470 Flavivirus envelope glycoprotein E, Stem/Anchor domain Domain IPR011998 Envelope glycoprotein E, central and dimerisation domain, flavivirus Domain IPR013755 Flaviviral glycoprotein E, central domain, subdomain 1 Homologous Superfamily IPR038055 Flaviviral glycoprotein E, dimerisation domain Homologous Superfamily IPR014756 Immunoglobulin E-set Homologous Superfamily IPR027287 Glycoprotein E, immunoglobulin-like domain, flavivirus Domain IPR013756 Flaviviral glycoprotein E, central domain, subdomain 2 Homologous Superfamily IPR000336 Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily Homologous Superfamily IPR036253 Flavivirus glycoprotein, central and dimerisation domain superfamily Homologous Superfamily