Annotations: 6IXH

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Type VI secretion lipoproteins	8052057	3002089	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF12790	e6ixhA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
B	PF12790	e6ixhB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
C	PF12790	e6ixhC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
D	PF12790	e6ixhD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
E	PF12790	e6ixhE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
F	PF12790	e6ixhF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
G	PF12790	e6ixhG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
H	PF12790	e6ixhH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
I	PF12790	e6ixhI1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
J	PF12790	e6ixhJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
K	PF12790	e6ixhK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
L	PF12790	e6ixhL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
M	PF12790	e6ixhM1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
N	PF12790	e6ixhN1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)
O	PF12790	e6ixhO1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF12790	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
B	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
C	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
D	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
E	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
F	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
G	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
H	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
I	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
J	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
K	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
L	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
M	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
N	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)
O	2.60.40.4150	Mainly Beta	Sandwich	Immunoglobulin-like	Type VI secretion system, lipoprotein SciN	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF12790	Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 (T6SS-SciN)	Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113	-	Family
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	PF06761	Intracellular multiplication and human macrophage-killing (IcmF-related)	Intracellular multiplication and human macrophage-killing	-	Family
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	PF06744	Type VI secretion protein IcmF C2-like domain (IcmF_C)	Type VI secretion protein IcmF C2-like domain	IcmF_C family represents a conserved region situated towards the C-terminal end of IcmF-like proteins. It was thought to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells leading to an ...	IcmF_C family represents a conserved region situated towards the C-terminal end of IcmF-like proteins. It was thought to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells leading to an increased conjugation frequency [1]. IcmF as a whole interacts with DotU whereby these bind tightly and form the docking area of the T6SS within the inner membrane. The exact function of this domain is not clear [2].	Domain
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	PF21070	Type VI secretion protein IcmF helical domain (IcmF_helical)	Type VI secretion protein IcmF helical domain	This entry represents the alpha-helical domain from the Type VI secretion protein IcmF [1]. This domain is also found in the TssM protein where it forms part of the tip complex [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Type VI Secretion System TssJ	-	-	-
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	Type VI Secretion System TssM	-	-	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR017734	Type VI secretion system, lipoprotein SciN	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR038706	Type VI secretion protein SciN-like superfamily	Homologous Superfamily
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	IPR048677	Type VI secretion system component TssM1, helical domain	Domain
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	IPR009612	IcmF-related	Domain
P, Q, R, S, T P, Q, R, S, T, U, V, W, X, Y	IPR010623	Type VI secretion system IcmF, C-terminal	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.