6IP8

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NB [auth 3E]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052572 3000068 SCOP2B (2022-06-29)
K [auth 2C]SCOP2B SuperfamilyRibosomal protein L68033688 3000724 SCOP2B (2022-06-29)
L [auth 2D]SCOP2B SuperfamilyRibosomal protein L16p/L10e8100400 3000884 SCOP2B (2022-06-29)
M [auth 2E]SCOP2B SuperfamilyRL5-like8073892 3001709 SCOP2B (2022-06-29)
N [auth 2F]SCOP2B SuperfamilyRibosomal protein L13e-like8053155 3002162 SCOP2B (2022-06-29)
P [auth 2H]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8098812 3000210 SCOP2B (2022-06-29)
R [auth 2J]SCOP2B SuperfamilyRibosomal protein L228076704 3001078 SCOP2B (2022-06-29)
S [auth 2K]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095977 3001045 SCOP2B (2022-06-29)
W [auth 2O]SCOP2B Superfamily60S Ribosomal protein L22e8053060 3002158 SCOP2B (2022-06-29)
X [auth 2P]SCOP2B Superfamily50S Ribosomal protein L14-like8072050 3000433 SCOP2B (2022-06-29)
Z [auth 2R]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
AA [auth 2S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
BA [auth 2T]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053050 3000334 SCOP2B (2022-06-29)
CA [auth 2U]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077123 3001045 SCOP2B (2022-06-29)
DA [auth 2V]SCOP2B SuperfamilyRibosomal protein L29e8053036 3002157 SCOP2B (2022-06-29)
EA [auth 2W]SCOP2B SuperfamilyL30e-like8077491 3001739 SCOP2B (2022-06-29)
HA [auth 2Z]SCOP2B SuperfamilyTranslational proteins8087455 3000811 SCOP2B (2022-06-29)
IA [auth 2a]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)
KA [auth 2c]SCOP2B SuperfamilyRibosomal protein L36e8053120 3002161 SCOP2B (2022-06-29)
MA [auth 2e]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)
NA [auth 2f]SCOP2B SuperfamilyRibosomal protein L39e8095603 3001756 SCOP2B (2022-06-29)
RA [auth 2j]SCOP2B SuperfamilyZn-binding ribosomal proteins8101551 3001320 SCOP2B (2022-06-29)
UA [auth 2n]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052791 3001397 SCOP2B (2022-06-29)
VA [auth 2o]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
WA [auth 2p]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8043545 3001043 SCOP2B (2022-06-29)
E [auth 1E]SCOP2B SuperfamilyTranslational proteins8078351 3000811 SCOP2B (2022-06-29)
XA [auth 2q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
XA [auth 2q]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
XA [auth 2q]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
YA [auth 2r]SCOP2B SuperfamilyRibosomal protein S78066003 3000799 SCOP2B (2022-06-29)
AB [auth 2t]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)
BB [auth 2u]SCOP2B SuperfamilyWinged helix DNA-binding domain8055714 3000034 SCOP2B (2022-06-29)
CB [auth 2v]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
CB [auth 2v]SCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
EB [auth 2x]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
GB [auth 2z]SCOP2B SuperfamilyS13-like H2TH domain8101555 3000053 SCOP2B (2022-06-29)
F [auth 1F]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052831 3002143 SCOP2B (2022-06-29)
F [auth 1F]SCOP2B SuperfamilyRibosomal protein L48052832 3001146 SCOP2B (2022-06-29)
HB [auth 20]SCOP2B SuperfamilyWinged helix DNA-binding domain8089318 3000034 SCOP2B (2022-06-29)
IB [auth 21]SCOP2B SuperfamilyRibosomal protein S108098806 3001336 SCOP2B (2022-06-29)
JB [auth 3A]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053139 3000068 SCOP2B (2022-06-29)
LB [auth 3C]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053143 3000068 SCOP2B (2022-06-29)
MB [auth 3D]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
QB [auth 3H]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
G [auth 1G]SCOP2B SuperfamilyTranslational machinery components8052887 3000571 SCOP2B (2022-06-29)
SB [auth 3J]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
TB [auth 3K]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
TB [auth 3K]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
UB [auth 3L]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
VB [auth 3M]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
XB [auth 3O]SCOP2B SuperfamilyWinged helix DNA-binding domain8090992 3000034 SCOP2B (2022-06-29)
ZB [auth 3Q]SCOP2B SuperfamilyRibosomal protein S30e-like8053453 3002190 SCOP2B (2022-06-29)
H [auth 1H]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053100 3000334 SCOP2B (2022-06-29)
H [auth 1H]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053099 3002160 SCOP2B (2022-06-29)
CC [auth zw]SCOP2B SuperfamilyTranslational machinery components8044552 3000571 SCOP2B (2022-06-29)
CC [auth zw]SCOP2B SuperfamilyN-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF18035419 3001963 SCOP2B (2022-06-29)
CC [auth zw]SCOP2B SuperfamilyL30e-like8036030 3001739 SCOP2B (2022-06-29)
I [auth 2A]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052923 3001378 SCOP2B (2022-06-29)
I [auth 2A]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052922 3002152 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NB [auth 3E]Ribosomal_S14_2e6ip83E1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
J [auth 2B]Ribosomal_L7Ae_1e6ip82B1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
K [auth 2C]Ribosomal_L6_2e6ip82C1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
K [auth 2C]Ribosomal_L6e6ip82C2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
L [auth 2D]Ribosomal_L16e6ip82D1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
M [auth 2E]Ribosomal_L5_Ce6ip82E1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
N [auth 2F]Ribosomal_L13ee6ip82F1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
O [auth 2G]Ribosomal_L14ee6ip82G1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
P [auth 2H]Ribosomal_L15ee6ip82H1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
Q [auth 2I]Ribosomal_L13e6ip82I1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
R [auth 2J]Ribosomal_L22e6ip82J1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
S [auth 2K]Ribosomal_L18e6ip82K1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
T [auth 2L]Ribosomal_L19e_Ne6ip82L1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
T [auth 2L]Ribosomal_L19e_Ce6ip82L2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
U [auth 2M]Ribosomal_L18Ae6ip82M1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
V [auth 2N]Ribosomal_L21ee6ip82N1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
W [auth 2O]Ribosomal_L22ee6ip82O1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
X [auth 2P]Ribosomal_L14e6ip82P1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
Y [auth 2Q]Ribosomal_L24ee6ip82Q1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
Z [auth 2R]Ribosomal_L23_3e6ip82R1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
AA [auth 2S]Ribosomal_L26e6ip82S1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
BA [auth 2T]Ribosomal_L27ee6ip82T1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
CA [auth 2U]Ribosomal_L18e6ip82U1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
DA [auth 2V]Ribosomal_L29ee6ip82V1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
EA [auth 2W]Ribosomal_L7Aee6ip82W1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
FA [auth 2X]Ribosomal_L31ee6ip82X1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
GA [auth 2Y]Ribosomal_L32ee6ip82Y1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
HA [auth 2Z]Ribosomal_L35Aee6ip82Z1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
IA [auth 2a]Ribosomal_L34ee6ip82a1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
JA [auth 2b]Ribosomal_L29_2e6ip82b1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
KA [auth 2c]Ribosomal_L36ee6ip82c1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
LA [auth 2d]Ribosomal_L37ee6ip82d1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
MA [auth 2e]Ribosomal_L38ee6ip82e1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
D [auth 1D]Ribosomal_L2_1e6ip81D2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
D [auth 1D]Ribosomal_L2_C_2e6ip81D1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
NA [auth 2f]Ribosomal_L39e6ip82f1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
OA [auth 2g]Ribosomal_L40ee6ip82g1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
PA [auth 2h]Ribosomal_L41e6ip82h1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
QA [auth 2i]Ribosomal_L44e6ip82i1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
RA [auth 2j]Ribosomal_L37aee6ip82j1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
SA [auth 2k]Ribosomal_L28ee6ip82k1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
UA [auth 2n]Ribosomal_S2_2e6ip82n1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
VA [auth 2o]Ribosomal_S3Ae_Ne6ip82o1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
VA [auth 2o]Ribosomal_S3Ae_Ce6ip82o2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
WA [auth 2p]Ribosomal_S3_Ce6ip82p2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
WA [auth 2p]KH_2_3e6ip82p1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
E [auth 1E]Ribosomal_L3e6ip81E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
XA [auth 2q]Ribosomal_S4ee6ip82q3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
XA [auth 2q]40S_S4_Ce6ip82q2 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
XA [auth 2q]RS4NTe6ip82q1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
YA [auth 2r]Ribosomal_S7_1e6ip82r1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
ZA [auth 2s]Ribosomal_S7e_Ne6ip82s1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
ZA [auth 2s]Ribosomal_S7e_C_1e6ip82s2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
AB [auth 2t]Ribosomal_S8ee6ip82t1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
BB [auth 2u]S10_plectine6ip82u1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
CB [auth 2v]Ribosomal_S17_1e6ip82v1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
DB [auth 2w]Ribosomal_S19e6ip82w1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
EB [auth 2x]Ribosomal_S9e6ip82x1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
FB [auth 2y]Ribosomal_S17ee6ip82y1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
GB [auth 2z]Ribosomal_S13e6ip82z1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
F [auth 1F]Ribosomal_L4e6ip81F1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
F [auth 1F]Ribos_L4_asso_Ce6ip81F2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
HB [auth 20]Ribosomal_S19ee6ip8201 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
IB [auth 21]Ribosomal_S10_1e6ip8211 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
JB [auth 3A]Ribosomal_S21ee6ip83A1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
KB [auth 3B]Ribosom_S12_S23e6ip83B1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
LB [auth 3C]Ribosomal_S26ee6ip83C1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
MB [auth 3D]Ribosomal_S28ee6ip83D1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
OB [auth 3F]DUF1899e6ip83F1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
PB [auth 3G]Ribosomal_S5_C_1e6ip83G3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
PB [auth 3G]Ribosomal_S5_3e6ip83G1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
PB [auth 3G]Ribosomal_S5_2e6ip83G2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
QB [auth 3H]Ribosomal_S6ee6ip83H1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
G [auth 1G]Ribosomal_L5ee6ip81G1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
RB [auth 3I]S4e6ip83I1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
SB [auth 3J]Ribosomal_L7Aee6ip83J1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
TB [auth 3K]Ribosomal_S13_Ne6ip83K1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
TB [auth 3K]Ribosomal_S15_2e6ip83K2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
UB [auth 3L]Ribosomal_S11e6ip83L1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
VB [auth 3M]Ribosomal_S8_N_1e6ip83M2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
VB [auth 3M]Ribosomal_S8_C_1e6ip83M1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
WB [auth 3N]Ribosomal_S24ee6ip83N1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
XB [auth 3O]Ribosomal_S25e6ip83O1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
YB [auth 3P]Ribosomal_S27ee6ip83P1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
ZB [auth 3Q]Ribosomal_S30e6ip83Q1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
AC [auth 3R]Ribosomal_S27e6ip83R1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
H [auth 1H]Ribosomal_L6ee6ip81H1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
CC [auth zw]eRF1_3e6ip8zw1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: eRF1_3ECOD (1.6)
CC [auth zw]eRF1_1_1e6ip8zw3 A: a+b three layersX: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology)H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology)T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1F: eRF1_1_1ECOD (1.6)
CC [auth zw]eRF1_2e6ip8zw2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: eRF1_2ECOD (1.6)
I [auth 2A]Ribosomal_L30_1e6ip82A1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
NB [auth 3E]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
J [auth 2B]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth 2C]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth 2D]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth 2E]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
M [auth 2E]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
N [auth 2F]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
O [auth 2G]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
P [auth 2H]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
Q [auth 2I]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
R [auth 2J]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
S [auth 2K]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
T [auth 2L]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
U [auth 2M]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
V [auth 2N]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
W [auth 2O]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
X [auth 2P]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Y [auth 2Q]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
Z [auth 2R]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
Z [auth 2R]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
AA [auth 2S]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth 2S]PF00467KOW motif (KOW)KOW motif- Family
BA [auth 2T]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
BA [auth 2T]PF00467KOW motif (KOW)KOW motif- Family
CA [auth 2U]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
DA [auth 2V]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
EA [auth 2W]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth 2X]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
GA [auth 2Y]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
HA [auth 2Z]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
IA [auth 2a]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
JA [auth 2b]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
KA [auth 2c]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
LA [auth 2d]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
MA [auth 2e]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
D [auth 1D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth 1D]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth 2f]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
OA [auth 2g]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
PA [auth 2h]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
QA [auth 2i]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
RA [auth 2j]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
SA [auth 2k]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
UA [auth 2n]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
UA [auth 2n]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
VA [auth 2o]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
WA [auth 2p]PF07650KH domain (KH_2)KH domain- Domain
WA [auth 2p]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
E [auth 1E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
XA [auth 2q]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
XA [auth 2q]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
XA [auth 2q]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
XA [auth 2q]PF00467KOW motif (KOW)KOW motif- Family
YA [auth 2r]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
ZA [auth 2s]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
AB [auth 2t]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
BB [auth 2u]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
CB [auth 2v]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
CB [auth 2v]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
DB [auth 2w]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
EB [auth 2x]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
FB [auth 2y]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
GB [auth 2z]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
F [auth 1F]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
F [auth 1F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
HB [auth 20]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
IB [auth 21]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
JB [auth 3A]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
KB [auth 3B]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
LB [auth 3C]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
MB [auth 3D]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
OB [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PB [auth 3G]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PB [auth 3G]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
QB [auth 3H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
G [auth 1G]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
G [auth 1G]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
RB [auth 3I]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
RB [auth 3I]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
SB [auth 3J]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
TB [auth 3K]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
TB [auth 3K]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
UB [auth 3L]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
VB [auth 3M]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
WB [auth 3N]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
XB [auth 3O]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
YB [auth 3P]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
ZB [auth 3Q]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
AC [auth 3R]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
H [auth 1H]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
H [auth 1H]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
CC [auth zw]PF03465eRF1 domain 3 (eRF1_3)eRF1 domain 3The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ...The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site [1]. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.
Domain
CC [auth zw]PF03463eRF1 domain 1 (eRF1_1)eRF1 domain 1The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ...The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site [1]. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.
Domain
CC [auth zw]PF03464eRF1 domain 2 (eRF1_2)eRF1 domain 2The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ...The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site [1]. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.
Domain
I [auth 2A]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
I [auth 2A]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NB [auth 3E]40S ribosomal protein S29
A [auth 1A]28S ribosomal RNA---
J [auth 2B]60S ribosomal protein L7a
K [auth 2C]60S ribosomal protein L9
L [auth 2D]60S ribosomal protein L10-like
M [auth 2E]60S ribosomal protein L11
N [auth 2F]60S ribosomal protein L13
O [auth 2G]60S ribosomal protein L14
P [auth 2H]60S ribosomal protein L15
Q [auth 2I]60S ribosomal protein L13a
R [auth 2J]60S ribosomal protein L17
S [auth 2K]60S ribosomal protein L18
B [auth 1B]5S ribosomal RNA---
T [auth 2L]60S ribosomal protein L19
U [auth 2M]60S ribosomal protein L18a
V [auth 2N]60S ribosomal protein L21
W [auth 2O]60S ribosomal protein L22
X [auth 2P]60S ribosomal protein L23
Y [auth 2Q]60S ribosomal protein L24
Z [auth 2R]60S ribosomal protein L23a
AA [auth 2S]60S ribosomal protein L26
BA [auth 2T]60S ribosomal protein L27
CA [auth 2U]60S ribosomal protein L27a
C [auth 1C]5.8S ribosomal RNA---
DA [auth 2V]60S ribosomal protein L29
EA [auth 2W]60S ribosomal protein L30
FA [auth 2X]60S ribosomal protein L31
GA [auth 2Y]60S ribosomal protein L32
HA [auth 2Z]60S ribosomal protein L35a
IA [auth 2a]60S ribosomal protein L34
JA [auth 2b]60S ribosomal protein L35
KA [auth 2c]60S ribosomal protein L36
LA [auth 2d]60S ribosomal protein L37
MA [auth 2e]60S ribosomal protein L38
D [auth 1D]60S ribosomal protein L8
NA [auth 2f]60S ribosomal protein L39
OA [auth 2g]Ubiquitin-60S ribosomal protein L40
PA [auth 2h]60S ribosomal protein L41
QA [auth 2i]60S ribosomal protein L36a
RA [auth 2j]60S ribosomal protein L37a
SA [auth 2k]60S ribosomal protein L28
TA [auth 2m]18S ribosomal RNA---
UA [auth 2n]40S ribosomal protein SA
VA [auth 2o]40S ribosomal protein S3a
WA [auth 2p]40S ribosomal protein S3
E [auth 1E]60S ribosomal protein L3
XA [auth 2q]40S ribosomal protein S4, X isoform
YA [auth 2r]40S ribosomal protein S5
ZA [auth 2s]40S ribosomal protein S7
AB [auth 2t]40S ribosomal protein S8
BB [auth 2u]40S ribosomal protein S10
CB [auth 2v]40S ribosomal protein S11
DB [auth 2w]40S ribosomal protein S15
EB [auth 2x]40S ribosomal protein S16
FB [auth 2y]40S ribosomal protein S17
GB [auth 2z]40S ribosomal protein S18
F [auth 1F]60S ribosomal protein L4
HB [auth 20]40S ribosomal protein S19
IB [auth 21]40S ribosomal protein S20
JB [auth 3A]40S ribosomal protein S21
KB [auth 3B]40S ribosomal protein S23
LB [auth 3C]40S ribosomal protein S26
MB [auth 3D]40S ribosomal protein S28
OB [auth 3F]Receptor of activated protein C kinase 1
PB [auth 3G]40S ribosomal protein S2
QB [auth 3H]40S ribosomal protein S6
G [auth 1G]60S ribosomal protein L5
RB [auth 3I]40S ribosomal protein S9
SB [auth 3J]40S ribosomal protein S12
TB [auth 3K]40S ribosomal protein S13
UB [auth 3L]40S ribosomal protein S14
VB [auth 3M]40S ribosomal protein S15a
WB [auth 3N]40S ribosomal protein S24
XB [auth 3O]40S ribosomal protein S25
YB [auth 3P]40S ribosomal protein S27
ZB [auth 3Q]40S ribosomal protein S30
AC [auth 3R]Ubiquitin-40S ribosomal protein S27a
H [auth 1H]60S ribosomal protein L6
BC [auth zv]mRNA---
CC [auth zw]Eukaryotic peptide chain release factor subunit 1
DC [auth zx]nascent peptide---
EC [auth zy]P-site tRNA---
FC [auth zz]HCV-IRES RNA---
I [auth 2A]60S ribosomal protein L7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
NB [auth 3E]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
NB [auth 3E]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
NB [auth 3E]IPR001209Small ribosomal subunit protein uS14Family
NB [auth 3E]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
J [auth 2B]IPR001921Large ribosomal subunit protein eL8Family
J [auth 2B]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
J [auth 2B]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
J [auth 2B]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
J [auth 2B]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth 2C]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth 2C]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth 2C]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth 2C]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth 2D]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth 2D]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
L [auth 2D]IPR047873Large ribosomal subunit protein uL16Family
L [auth 2D]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
L [auth 2D]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth 2E]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth 2E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth 2E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth 2E]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth 2E]IPR002132Large ribosomal subunit protein uL5Family
N [auth 2F]IPR001380Large ribosomal subunit protein eL13Family
N [auth 2F]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
O [auth 2G]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth 2G]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth 2G]IPR039660Large ribosomal subunit protein eL14Family
O [auth 2G]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
O [auth 2G]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth 2H]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth 2H]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth 2H]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth 2H]IPR000439Large ribosomal subunit protein eL15Family
Q [auth 2I]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
Q [auth 2I]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
Q [auth 2I]IPR005822Large ribosomal subunit protein uL13Family
Q [auth 2I]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth 2J]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth 2J]IPR001063Large ribosomal subunit protein uL22Family
R [auth 2J]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth 2J]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
S [auth 2K]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
S [auth 2K]IPR000039Large ribosomal subunit protein eL18Family
S [auth 2K]IPR021131Large ribosomal subunit protein uL15/eL18Domain
S [auth 2K]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth 2L]IPR039547Large ribosomal subunit protein eL19Family
T [auth 2L]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
T [auth 2L]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
T [auth 2L]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
T [auth 2L]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
T [auth 2L]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth 2M]IPR028877Large ribosomal subunit protein eL20Family
U [auth 2M]IPR023573Large ribosomal subunit protein eL20 domainDomain
U [auth 2M]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
V [auth 2N]IPR001147Large ribosomal subunit protein eL21Family
V [auth 2N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth 2N]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
V [auth 2N]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth 2O]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
W [auth 2O]IPR002671Large ribosomal subunit protein eL22Family
X [auth 2P]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
X [auth 2P]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
X [auth 2P]IPR000218Large ribosomal subunit protein uL14Family
Y [auth 2Q]IPR011017TRASH domainDomain
Y [auth 2Q]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Y [auth 2Q]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Y [auth 2Q]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth 2R]IPR019985Large ribosomal subunit protein uL23Family
Z [auth 2R]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Z [auth 2R]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth 2R]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth 2R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth 2R]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
AA [auth 2S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth 2S]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
AA [auth 2S]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth 2S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth 2S]IPR005824KOWDomain
AA [auth 2S]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth 2T]IPR001141Large ribosomal subunit protein eL27Family
BA [auth 2T]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BA [auth 2T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth 2T]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BA [auth 2T]IPR005824KOWDomain
BA [auth 2T]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
CA [auth 2U]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
CA [auth 2U]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth 2U]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth 2U]IPR030878Large ribosomal subunit protein uL15Family
CA [auth 2U]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth 2V]IPR002673Large ribosomal subunit protein eL29Family
EA [auth 2W]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
EA [auth 2W]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EA [auth 2W]IPR000231Large ribosomal subunit protein eL30Family
EA [auth 2W]IPR039109Large ribosomal subunit protein eL30-likeFamily
EA [auth 2W]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
FA [auth 2X]IPR000054Large ribosomal subunit protein eL31Family
FA [auth 2X]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
FA [auth 2X]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GA [auth 2Y]IPR001515Large ribosomal subunit protein eL32Family
GA [auth 2Y]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
GA [auth 2Y]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HA [auth 2Z]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
HA [auth 2Z]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
HA [auth 2Z]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HA [auth 2Z]IPR001780Large ribosomal subunit protein eL33Family
IA [auth 2a]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
IA [auth 2a]IPR008195Large ribosomal subunit protein eL34Family
JA [auth 2b]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
JA [auth 2b]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
JA [auth 2b]IPR001854Large ribosomal subunit protein uL29Family
JA [auth 2b]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
KA [auth 2c]IPR000509Large ribosomal subunit protein eL36Family
KA [auth 2c]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
LA [auth 2d]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
LA [auth 2d]IPR001569Large ribosomal subunit protein eL37Family
LA [auth 2d]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
LA [auth 2d]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth 2e]IPR002675Large ribosomal subunit protein eL38Family
MA [auth 2e]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
D [auth 1D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth 1D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth 1D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth 1D]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
D [auth 1D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth 1D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 1D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth 1D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth 1D]IPR002171Large ribosomal subunit protein uL2Family
NA [auth 2f]IPR000077Large ribosomal subunit protein eL39Family
NA [auth 2f]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
NA [auth 2f]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OA [auth 2g]IPR019954Ubiquitin conserved siteConserved Site
OA [auth 2g]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
OA [auth 2g]IPR000626Ubiquitin-like domainDomain
OA [auth 2g]IPR019956Ubiquitin domainDomain
OA [auth 2g]IPR001975Large ribosomal subunit protein eL40 domainDomain
OA [auth 2g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
PA [auth 2h]IPR007836Large ribosomal subunit protein eS32Family
QA [auth 2i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth 2i]IPR000552Large ribosomal subunit protein eL42Family
RA [auth 2j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth 2j]IPR002674Large ribosomal subunit protein eL43Family
RA [auth 2j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth 2k]IPR029004Ribosomal eL28/Mak16Domain
SA [auth 2k]IPR002672Large ribosomal subunit protein eL28Family
UA [auth 2n]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
UA [auth 2n]IPR001865Small ribosomal subunit protein uS2Family
UA [auth 2n]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
UA [auth 2n]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
UA [auth 2n]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
UA [auth 2n]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
UA [auth 2n]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
VA [auth 2o]IPR001593Small ribosomal subunit protein eS1Family
VA [auth 2o]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
VA [auth 2o]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
WA [auth 2p]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
WA [auth 2p]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
WA [auth 2p]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
WA [auth 2p]IPR004044K Homology domain, type 2Domain
WA [auth 2p]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
WA [auth 2p]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
WA [auth 2p]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
E [auth 1E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth 1E]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth 1E]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth 1E]IPR000597Large ribosomal subunit protein uL3Family
E [auth 1E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
XA [auth 2q]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
XA [auth 2q]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
XA [auth 2q]IPR013845Small ribosomal subunit protein eS4, central regionDomain
XA [auth 2q]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth 2q]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
XA [auth 2q]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
XA [auth 2q]IPR002942RNA-binding S4 domainDomain
XA [auth 2q]IPR000876Small ribosomal subunit protein eS4Family
XA [auth 2q]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
XA [auth 2q]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
XA [auth 2q]IPR005824KOWDomain
YA [auth 2r]IPR023798Small ribosomal subunit protein uS7 domainDomain
YA [auth 2r]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
YA [auth 2r]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
YA [auth 2r]IPR000235Small ribosomal subunit protein uS7Family
YA [auth 2r]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
ZA [auth 2s]IPR000554Small ribosomal subunit protein eS7Family
ZA [auth 2s]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
AB [auth 2t]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
AB [auth 2t]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
AB [auth 2t]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
AB [auth 2t]IPR001047Small ribosomal subunit protein eS8Family
BB [auth 2u]IPR037447Small ribosomal subunit protein eS10Family
BB [auth 2u]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BB [auth 2u]IPR005326Plectin/eS10, N-terminalDomain
CB [auth 2v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
CB [auth 2v]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
CB [auth 2v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CB [auth 2v]IPR000266Small ribosomal subunit protein uS17Family
CB [auth 2v]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
DB [auth 2w]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
DB [auth 2w]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
DB [auth 2w]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
DB [auth 2w]IPR002222Small ribosomal subunit protein uS19Family
EB [auth 2x]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
EB [auth 2x]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EB [auth 2x]IPR000754Small ribosomal subunit protein uS9Family
EB [auth 2x]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
FB [auth 2y]IPR001210Small ribosomal subunit protein eS17Family
FB [auth 2y]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
FB [auth 2y]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
GB [auth 2z]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
GB [auth 2z]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
GB [auth 2z]IPR001892Small ribosomal subunit protein uS13Family
GB [auth 2z]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
F [auth 1F]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
F [auth 1F]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
F [auth 1F]IPR002136Large ribosomal subunit protein uL4Family
F [auth 1F]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
F [auth 1F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
HB [auth 20]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
HB [auth 20]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
HB [auth 20]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
HB [auth 20]IPR001266Small ribosomal subunit protein eS19Family
IB [auth 21]IPR027486Small ribosomal subunit protein uS10 domainDomain
IB [auth 21]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IB [auth 21]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
IB [auth 21]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IB [auth 21]IPR001848Small ribosomal subunit protein uS10Family
JB [auth 3A]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
JB [auth 3A]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
JB [auth 3A]IPR001931Small ribosomal subunit protein eS21Family
KB [auth 3B]IPR006032Small ribosomal subunit protein uS12Family
KB [auth 3B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KB [auth 3B]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
LB [auth 3C]IPR047864Ribosomal protein eS26, conserved siteConserved Site
LB [auth 3C]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
LB [auth 3C]IPR000892Small ribosomal subunit protein eS26Family
MB [auth 3D]IPR028626Ribosomal protein eS28 conserved siteConserved Site
MB [auth 3D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MB [auth 3D]IPR000289Small ribosomal subunit protein eS28Family
OB [auth 3F]IPR019775WD40 repeat, conserved siteConserved Site
OB [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OB [auth 3F]IPR045223Small ribosomal subunit protein RACK1-likeFamily
OB [auth 3F]IPR020472G-protein beta WD-40 repeatRepeat
OB [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OB [auth 3F]IPR001680WD40 repeatRepeat
PB [auth 3G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PB [auth 3G]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
PB [auth 3G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PB [auth 3G]IPR000851Small ribosomal subunit protein uS5Family
PB [auth 3G]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
PB [auth 3G]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
PB [auth 3G]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
QB [auth 3H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
QB [auth 3H]IPR001377Small ribosomal subunit protein eS6Family
QB [auth 3H]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth 1G]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
G [auth 1G]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
RB [auth 3I]IPR002942RNA-binding S4 domainDomain
RB [auth 3I]IPR022801Small ribosomal subunit protein uS4Family
RB [auth 3I]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
RB [auth 3I]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
RB [auth 3I]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
RB [auth 3I]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
SB [auth 3J]IPR000530Small ribosomal subunit protein eS12Family
SB [auth 3J]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
SB [auth 3J]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
SB [auth 3J]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
TB [auth 3K]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
TB [auth 3K]IPR000589Small ribosomal subunit protein uS15Family
TB [auth 3K]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
TB [auth 3K]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
UB [auth 3L]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
UB [auth 3L]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
UB [auth 3L]IPR001971Small ribosomal subunit protein uS11Family
VB [auth 3M]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
VB [auth 3M]IPR000630Small ribosomal subunit protein uS8Family
VB [auth 3M]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
WB [auth 3N]IPR001976Small ribosomal subunit protein eS24Family
WB [auth 3N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WB [auth 3N]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
XB [auth 3O]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
XB [auth 3O]IPR004977Small ribosomal subunit protein eS25Family
YB [auth 3P]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
YB [auth 3P]IPR000592Small ribosomal subunit protein eS27Family
YB [auth 3P]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZB [auth 3Q]IPR019954Ubiquitin conserved siteConserved Site
ZB [auth 3Q]IPR000626Ubiquitin-like domainDomain
ZB [auth 3Q]IPR006846Small ribosomal subunit protein eS30Family
ZB [auth 3Q]IPR039415Ubiquitin-like protein FUBIDomain
ZB [auth 3Q]IPR019956Ubiquitin domainDomain
ZB [auth 3Q]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
AC [auth 3R]IPR019954Ubiquitin conserved siteConserved Site
AC [auth 3R]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AC [auth 3R]IPR000626Ubiquitin-like domainDomain
AC [auth 3R]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
AC [auth 3R]IPR002906Small ribosomal subunit protein eS31Domain
AC [auth 3R]IPR019956Ubiquitin domainDomain
AC [auth 3R]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
H [auth 1H]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
H [auth 1H]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth 1H]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth 1H]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth 1H]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth 1H]IPR000915Large ribosomal subunit protein eL6Family
CC [auth zw]IPR004403Peptide chain release factor eRF1/aRF1Family
CC [auth zw]IPR005141eRF1 domain 2Domain
CC [auth zw]IPR005140eRF1 domain 1/Pelota-likeDomain
CC [auth zw]IPR042226eRF1, domain 2 superfamilyHomologous Superfamily
CC [auth zw]IPR024049eRF1, domain 1Homologous Superfamily
CC [auth zw]IPR005142eRF1 domain 3Domain
CC [auth zw]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth 2A]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
I [auth 2A]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
I [auth 2A]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
I [auth 2A]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
I [auth 2A]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
I [auth 2A]IPR039699Large ribosomal subunit protein uL30Family
I [auth 2A]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
NB [auth 3E]PharosP62273
J [auth 2B]PharosP62424
K [auth 2C]PharosP32969
L [auth 2D]PharosQ96L21
M [auth 2E]PharosP62913
N [auth 2F]PharosP26373
O [auth 2G]PharosP50914
P [auth 2H]PharosP61313
Q [auth 2I]PharosP40429
R [auth 2J]PharosP18621
S [auth 2K]PharosQ07020
T [auth 2L]PharosP84098
V [auth 2N]PharosP46778
W [auth 2O]PharosP35268
X [auth 2P]PharosP62829
Y [auth 2Q]PharosP83731
Z [auth 2R]PharosP62750
AA [auth 2S]PharosP61254
BA [auth 2T]PharosP61353
CA [auth 2U]PharosP46776
EA [auth 2W]PharosP62888
FA [auth 2X]PharosP62899
GA [auth 2Y]PharosP62910
HA [auth 2Z]PharosP18077
IA [auth 2a]PharosP49207
JA [auth 2b]PharosP42766
KA [auth 2c]PharosQ9Y3U8
LA [auth 2d]PharosP61927
MA [auth 2e]PharosP63173
OA [auth 2g]PharosP62987
PA [auth 2h]PharosP62945
QA [auth 2i]PharosP83881
RA [auth 2j]PharosP61513
SA [auth 2k]PharosP46779
UA [auth 2n]PharosP08865
WA [auth 2p]PharosP23396
E [auth 1E]PharosP39023
XA [auth 2q]PharosP62701
YA [auth 2r]PharosP46782
ZA [auth 2s]PharosP62081
AB [auth 2t]PharosP62241
BB [auth 2u]PharosP46783
CB [auth 2v]PharosP62280
DB [auth 2w]PharosP62841
EB [auth 2x]PharosP62249
FB [auth 2y]PharosP08708
GB [auth 2z]PharosP62269
F [auth 1F]PharosP36578
HB [auth 20]PharosP39019
IB [auth 21]PharosP60866
JB [auth 3A]PharosP63220
KB [auth 3B]PharosP62266
LB [auth 3C]PharosP62854
MB [auth 3D]PharosP62857
OB [auth 3F]PharosP63244
PB [auth 3G]PharosP15880
QB [auth 3H]PharosP62753
G [auth 1G]PharosP46777
RB [auth 3I]PharosP46781
SB [auth 3J]PharosP25398
TB [auth 3K]PharosP62277
UB [auth 3L]PharosP62263
VB [auth 3M]PharosP62244
WB [auth 3N]PharosP62847
XB [auth 3O]PharosP62851
YB [auth 3P]PharosP42677
ZB [auth 3Q]PharosP62861
AC [auth 3R]PharosP62979
H [auth 1H]PharosQ02878
CC [auth zw]PharosP62495
I [auth 2A]PharosP18124