6IDI
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 8.0.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02832 | e6idiA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
A | PF00869 | e6idiA1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
A | PF21659 | e6idiA2 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
B | PF02832 | e6idiB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
B | PF00869 | e6idiB2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
B | PF21659 | e6idiB1 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
C | PF02832 | e6idiC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
C | PF00869 | e6idiC2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
C | PF21659 | e6idiC3 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
D | PF01570 | e6idiD2 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
D | PF01004 | e6idiD1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
E | PF01570 | e6idiE2 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
E | PF01004 | e6idiE1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
F | PF01570 | e6idiF1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
F | PF01004 | e6idiF2 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
G [auth H] | PF07686 | e6idiH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth I] | PF07686 | e6idiI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth M] | PF07686 | e6idiM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth J] | PF07686 | e6idiJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth L] | PF07686 | e6idiL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth N] | PF07686 | e6idiN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
G [auth H], H [auth I], K [auth M] | Fab 1H10 | VH | Homo sapiens (human) | IGHV3-30*01, IGHV3-30*03, IGHV3-30*04, IGHV3-30*06, IGHV3-30*07, IGHV3-30*08, IGHV3-30*09, IGHV3-30*11, IGHV3-30*12, IGHV3-30*14, IGHV3-30*16, IGHV3-30*17, IGHV3-30*19, IGHV3-30-3*01, IGHV3-33*05, IGHV3-30-3*03, IGHJ6*01 | V-DOMAIN VH | IG | VH-V-LAMBDA | IMGT (202417-0) |
I [auth J], J [auth L], L [auth N] | Fab 1H10 | V-LAMBDA | Homo sapiens (human) | IGLV1-47*01, IGLJ2*01, IGLJ3*02, IGLJ3*01 | V-DOMAIN V-LAMBDA | IG | VH-V-LAMBDA | IMGT (202417-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
G [auth H], H [auth I], K [auth M] | Heavy Chain | IGHV3 | - | premembrane protein | SAbDab (2024-05-03) |
I [auth J], J [auth L], L [auth N] | Light Chain | IGLV1 | Lambda | premembrane protein | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | - | Domain | |
PF21659 | Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem) | Flavivirus envelope glycoprotein E, stem/anchor domain | This entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. | Domain | |
PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain | |
PF01570 | Flavivirus polyprotein propeptide (Flavi_propep) | Flavivirus polyprotein propeptide | - | Family | |
PF01004 | Flavivirus envelope glycoprotein M (Flavi_M) | Flavivirus envelope glycoprotein M | - | Family | |
PF01003 | Flavivirus capsid protein C (Flavi_capsid) | Flavivirus capsid protein C | - | Family | |