Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 3]PF17207e6hv934 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
A [auth 3]PF17855e6hv935 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
A [auth 3]PF14551e6hv933 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
A [auth 3]PF00493e6hv931 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
A [auth 3]F_UNCLASSIFIEDe6hv932 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
J [auth F]PF05916e6hv9F1 A: alpha bundlesX: GINS helical bundle-like (From Homology)H: GINS helical bundle-likeT: PSF1 N-terminal domain-likeF: PF05916ECOD (1.6)
J [auth F]PF16922e6hv9F2 A: a+b two layersX: L9 N-domain-likeH: GINS/PriA/YqbF domain (From Topology)T: GINS/PriA/YqbF domainF: PF16922ECOD (1.6)
K [auth G]PF02724e6hv9G3 A: alpha arraysX: HhH/H2THH: Cdc45 CID domain (From Topology)T: Cdc45 CID domainF: PF02724ECOD (1.6)
K [auth G]PF02724e6hv9G1 A: a+b three layersX: C-terminal domain in DHH phosphoesterases (From Topology)H: C-terminal domain in DHH phosphoesterases (From Topology)T: C-terminal domain in DHH phosphoesterasesF: PF02724ECOD (1.6)
K [auth G]PF02724e6hv9G2 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: DHH phosphoesterasesF: PF02724ECOD (1.6)
O [auth B]F_UNCLASSIFIEDe6hv9B2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
O [auth B]F_UNCLASSIFIEDe6hv9B3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
O [auth B]PF04042e6hv9B1 A: a+b four layersX: Carbon-nitrogen hydrolase-likeH: Metallo-dependent phosphatases (From Topology)T: Metallo-dependent phosphatasesF: PF04042ECOD (1.6)
P [auth A]PF08490e6hv9A3 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF08490ECOD (1.6)
P [auth A]F_UNCLASSIFIEDe6hv9A2 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: F_UNCLASSIFIEDECOD (1.6)
P [auth A]PF22912e6hv9A1 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: PF22912ECOD (1.6)
B [auth 4]PF17207e6hv942 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
B [auth 4]PF17855e6hv945 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
B [auth 4]PF14551e6hv941 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
B [auth 4]PF00493e6hv943 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
B [auth 4]PF17207e6hv944 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
C [auth 5]PF17207e6hv954 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
C [auth 5]PF17855e6hv952 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
C [auth 5]PF21933e6hv955 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21933ECOD (1.6)
C [auth 5]PF14551e6hv951 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
C [auth 5]PF00493e6hv953 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
C [auth 5]F_UNCLASSIFIEDe6hv956 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
D [auth 6]PF17207e6hv961 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
D [auth 6]PF17855e6hv965 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
D [auth 6]PF14551e6hv964 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
D [auth 6]PF00493e6hv962 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
D [auth 6]PF17207e6hv963 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF17207ECOD (1.6)
E [auth 2]PF17207e6hv921 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
E [auth 2]PF17855e6hv925 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
E [auth 2]PF14551e6hv922 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
E [auth 2]PF00493e6hv924 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
E [auth 2]F_UNCLASSIFIEDe6hv923 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
F [auth 7]PF17207e6hv974 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF17207ECOD (1.6)
F [auth 7]PF17855e6hv972 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17855ECOD (1.6)
F [auth 7]PF14551e6hv973 A: a+b complex topologyX: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)F: PF14551ECOD (1.6)
F [auth 7]PF00493e6hv971 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00493ECOD (1.6)
F [auth 7]F_UNCLASSIFIEDe6hv975 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
G [auth C]PF05916e6hv9C1 A: alpha bundlesX: GINS helical bundle-like (From Homology)H: GINS helical bundle-likeT: PSF1 N-terminal domain-likeF: PF05916ECOD (1.6)
G [auth C]F_UNCLASSIFIEDe6hv9C2 A: a+b two layersX: L9 N-domain-likeH: GINS/PriA/YqbF domain (From Topology)T: GINS/PriA/YqbF domainF: F_UNCLASSIFIEDECOD (1.6)
H [auth D]PF05916e6hv9D1 A: alpha bundlesX: GINS helical bundle-like (From Homology)H: GINS helical bundle-likeT: PSF2 C-terminal domain-likeF: PF05916ECOD (1.6)
H [auth D]F_UNCLASSIFIEDe6hv9D2 A: a+b two layersX: L9 N-domain-likeH: GINS/PriA/YqbF domain (From Topology)T: GINS/PriA/YqbF domainF: F_UNCLASSIFIEDECOD (1.6)
I [auth E]PF05916e6hv9E1 A: alpha bundlesX: GINS helical bundle-like (From Homology)H: GINS helical bundle-likeT: PSF2 C-terminal domain-likeF: PF05916ECOD (1.6)
I [auth E]PF22466e6hv9E2 A: a+b two layersX: L9 N-domain-likeH: GINS/PriA/YqbF domain (From Topology)T: GINS/PriA/YqbF domainF: PF22466ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 3]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
A [auth 3]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
J [auth F]PF05916GINS complex protein (Sld5)GINS complex protein- Family
J [auth F]PF16922DNA replication complex GINS protein SLD5 C-terminus (SLD5_C)DNA replication complex GINS protein SLD5 C-terminusThe C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1].Domain
O [auth B]PF04042DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B)DNA polymerase alpha/epsilon subunit B- Family
P [auth A]PF08490Domain of unknown function (DUF1744) (DUF1744)Domain of unknown function (DUF1744)This domain is found at the C-terminal of the epsilon catalytic subunit of DNA polymerase. It is found C terminal to Pfam:PF03104 and Pfam:PF00136.Domain
B [auth 4]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
B [auth 4]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
B [auth 4]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
C [auth 5]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
C [auth 5]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
D [auth 6]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
D [auth 6]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
D [auth 6]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
E [auth 2]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
E [auth 2]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
F [auth 7]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins.Domain
F [auth 7]PF00493MCM P-loop domain (MCM)MCM P-loop domain- Domain
F [auth 7]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins.Domain
F [auth 7]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].Domain
G [auth C]PF05916GINS complex protein (Sld5)GINS complex protein- Family
H [auth D]PF05916GINS complex protein (Sld5)GINS complex protein- Family
I [auth E]PF05916GINS complex protein (Sld5)GINS complex protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 3]DNA replication licensing factor MCM3
J [auth F]DNA replication complex GINS protein SLD5-
K [auth G]Cell division control protein 45
L [auth X]DNA (5'-D(*GP*CP*AP*GP*CP*CP*AP*CP*GP*CP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*A)-3')---
M [auth Y]DNA (5'-D(P*TP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*GP*CP*GP*TP*GP*GP*CP*TP*GP*C)-3')---
N [auth J]DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3')---
O [auth B]DNA polymerase epsilon subunit B
P [auth A]DNA polymerase epsilon catalytic subunit
B [auth 4]DNA replication licensing factor MCM4
C [auth 5]DNA replication licensing factor MCM5
D [auth 6]DNA replication licensing factor MCM6
E [auth 2]DNA replication licensing factor MCM2
F [auth 7]DNA replication licensing factor MCM7
G [auth C]DNA replication complex GINS protein PSF1-
H [auth D]DNA replication complex GINS protein PSF2-
I [auth E]DNA replication complex GINS protein PSF3-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 3]IPR031327Mini-chromosome maintenance proteinFamily
A [auth 3]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
A [auth 3]IPR003593AAA+ ATPase domainDomain
A [auth 3]IPR001208MCM domainDomain
A [auth 3]IPR041562MCM, AAA-lid domainDomain
A [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 3]IPR027925MCM, N-terminal domainDomain
A [auth 3]IPR008046DNA replication licensing factor Mcm3Family
A [auth 3]IPR033762MCM OB domainDomain
A [auth 3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth F]IPR008591GINS complex subunit Sld5Family
J [auth F]IPR038749GINS complex protein Sld5, alpha-helical domainDomain
J [auth F]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
J [auth F]IPR021151GINS subunit, domain ADomain
J [auth F]IPR031633DNA replication complex GINS protein SLD5, C-terminalDomain
K [auth G]IPR003874CDC45 familyFamily
O [auth B]IPR016266DNA polymerase epsilon, subunit BFamily
O [auth B]IPR007185DNA polymerase alpha/delta/epsilon, subunit BDomain
P [auth A]IPR036397Ribonuclease H superfamilyHomologous Superfamily
P [auth A]IPR006134DNA-directed DNA polymerase, family B, multifunctional domainDomain
P [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
P [auth A]IPR023211DNA polymerase, palm domain superfamilyHomologous Superfamily
P [auth A]IPR006172DNA-directed DNA polymerase, family BFamily
P [auth A]IPR029703DNA polymerase epsilon catalytic subunitFamily
P [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
P [auth A]IPR013697DNA polymerase epsilon, catalytic subunit A, C-terminalDomain
P [auth A]IPR006133DNA-directed DNA polymerase, family B, exonuclease domainDomain
P [auth A]IPR042087DNA polymerase family B, thumb domainHomologous Superfamily
B [auth 4]IPR031327Mini-chromosome maintenance proteinFamily
B [auth 4]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
B [auth 4]IPR001208MCM domainDomain
B [auth 4]IPR041562MCM, AAA-lid domainDomain
B [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 4]IPR027925MCM, N-terminal domainDomain
B [auth 4]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
B [auth 4]IPR008047Mini-chromosome maintenance complex protein 4Family
B [auth 4]IPR033762MCM OB domainDomain
B [auth 4]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth 5]IPR031327Mini-chromosome maintenance proteinFamily
C [auth 5]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 5]IPR001208MCM domainDomain
C [auth 5]IPR041562MCM, AAA-lid domainDomain
C [auth 5]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 5]IPR027925MCM, N-terminal domainDomain
C [auth 5]IPR033762MCM OB domainDomain
C [auth 5]IPR008048DNA replication licensing factor Mcm5Family
C [auth 5]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 6]IPR008049DNA replication licensing factor Mcm6Family
D [auth 6]IPR041024Mcm6, C-terminal winged-helix domainDomain
D [auth 6]IPR031327Mini-chromosome maintenance proteinFamily
D [auth 6]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
D [auth 6]IPR001208MCM domainDomain
D [auth 6]IPR041562MCM, AAA-lid domainDomain
D [auth 6]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 6]IPR027925MCM, N-terminal domainDomain
D [auth 6]IPR033762MCM OB domainDomain
D [auth 6]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth 2]IPR031327Mini-chromosome maintenance proteinFamily
E [auth 2]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 2]IPR001208MCM domainDomain
E [auth 2]IPR041562MCM, AAA-lid domainDomain
E [auth 2]IPR008045DNA replication licensing factor Mcm2Family
E [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 2]IPR027925MCM, N-terminal domainDomain
E [auth 2]IPR033762MCM OB domainDomain
E [auth 2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 7]IPR031327Mini-chromosome maintenance proteinFamily
F [auth 7]IPR008050DNA replication licensing factor Mcm7Family
F [auth 7]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 7]IPR003593AAA+ ATPase domainDomain
F [auth 7]IPR001208MCM domainDomain
F [auth 7]IPR041562MCM, AAA-lid domainDomain
F [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 7]IPR027925MCM, N-terminal domainDomain
F [auth 7]IPR033762MCM OB domainDomain
F [auth 7]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR005339GINS complex, subunit Psf1Family
G [auth C]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
G [auth C]IPR021151GINS subunit, domain ADomain
H [auth D]IPR007257DNA replication complex GINS protein Psf2Family
H [auth D]IPR021151GINS subunit, domain ADomain
H [auth D]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth E]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth E]IPR021151GINS subunit, domain ADomain
I [auth E]IPR010492GINS complex, subunit Psf3Family
I [auth E]IPR038437GINS complex, subunit Psf3 superfamilyHomologous Superfamily