6GKF

Structure of 14-3-3 gamma in complex with caspase-2 14-3-3 binding motif Ser139

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
E [auth B]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	14-3-3 protein	8082813	3001329	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00244	e6gkfA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
B [auth C]	PF00244	e6gkfC1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
C [auth E]	PF00244	e6gkfE1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
D [auth G]	PF00244	e6gkfG1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
E [auth B]	PF00244	e6gkfB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
F [auth D]	PF00244	e6gkfD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
G [auth F]	PF00244	e6gkfF1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)
H	PF00244	e6gkfH1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00244	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
B [auth C]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
C [auth E]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
D [auth G]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
E [auth B]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
F [auth D]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
G [auth F]	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
H	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	PF00244	14-3-3 protein (14-3-3)	14-3-3 protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	14-3-3 protein gamma	protein binding binding protein domain specific binding phosphoprotein binding phosphoserine residue binding protein phosphorylated amino acid binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase C inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity protein binding binding protein domain specific binding phosphoprotein binding phosphoserine residue binding protein phosphorylated amino acid binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase C inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity molecular sequestering activity protein sequestering activity RNA binding organic cyclic compound binding nucleic acid binding kinase binding protein kinase C binding enzyme binding protein kinase binding protein tyrosine kinase binding signaling receptor binding receptor tyrosine kinase binding identical protein binding insulin-like growth factor receptor binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction cellular response to nutrient levels cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity regulation of transferase activity negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of kinase activity negative regulation of transferase activity regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular metabolic process primary metabolic process regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process organic substance metabolic process negative regulation of cellular process protein metabolic process negative regulation of macromolecule metabolic process organonitrogen compound metabolic process negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity regulation of macromolecule metabolic process negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation developmental process multicellular organismal process regulation of developmental process cellular developmental process regulation of cell differentiation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development regulation of neuron differentiation system development protein localization localization establishment of protein localization cellular localization protein targeting cellular macromolecule localization macromolecule localization establishment of localization regulation of synaptic plasticity trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of biological quality negative regulation of signaling negative regulation of intracellular signal transduction intracellular signal transduction negative regulation of cell communication negative regulation of TORC1 signaling regulation of intracellular signal transduction negative regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction TORC1 signaling cellular response to nitrogen compound response to organic substance response to endogenous stimulus response to organonitrogen compound response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to organonitrogen compound response to hormone response to chemical response to insulin cellular response to organic substance cellular response to insulin stimulus cellular response to hormone stimulus	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol presynapse synapse
I, J, K, L, M I, J, K, L, M, N, O, P	Caspase-2	protein binding binding protein domain specific binding cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity cysteine-type endopeptidase activity involved in execution phase of apoptosis cysteine-type endopeptidase activity involved in apoptotic process cysteine-type endopeptidase activity involved in apoptotic signaling pathway enzyme binding protein binding binding protein domain specific binding cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity cysteine-type endopeptidase activity involved in execution phase of apoptosis cysteine-type endopeptidase activity involved in apoptotic process cysteine-type endopeptidase activity involved in apoptotic signaling pathway enzyme binding identical protein binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway negative regulation of programmed cell death negative regulation of biological process negative regulation of apoptotic process negative regulation of cellular process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process execution phase of apoptosis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process biosynthetic process proteolysis organic substance biosynthetic process protein processing metabolic process protein metabolic process macromolecule metabolic process signal transduction in absence of ligand cell surface receptor signaling pathway extrinsic apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand intracellular signal transduction intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway response to mechanical stimulus response to external stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus regulation of cell cycle phase transition negative regulation of cell cycle cell cycle G1/S phase transition negative regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cell cycle phase transition cell cycle negative regulation of G1/S transition of mitotic cell cycle mitotic G1/S transition checkpoint signaling regulation of cell cycle process DNA integrity checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle DNA damage checkpoint signaling cell cycle phase transition regulation of cell cycle G1/S phase transition DNA damage response, signal transduction by p53 class mediator mitotic cell cycle regulation of mitotic cell cycle regulation of cell cycle cell cycle process negative regulation of mitotic cell cycle phase transition negative regulation of cell cycle G1/S phase transition signal transduction by p53 class mediator negative regulation of cell cycle process cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling mitotic G1 DNA damage checkpoint signaling DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest signal transduction in response to DNA damage mitotic cell cycle phase transition rhythmic process developmental process ovulation cycle process multicellular organismal process gonad development reproductive system development reproductive process female gonad development sex differentiation multicellular organismal reproductive process animal organ development female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction ovulation cycle multicellular organism development development of primary sexual characteristics anatomical structure development reproductive structure development luteolysis system development cellular developmental process cell development programmed cell death involved in cell development cell differentiation ectopic germ cell programmed cell death sensory organ development eye development retina development in camera-type eye visual system development neural retina development camera-type eye development sensory system development	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle cytoplasm cytosol protein-containing complex catalytic complex peptidase complex endopeptidase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR023409	14-3-3 protein, conserved site	Conserved Site
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR023410	14-3-3 domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR036815	14-3-3 domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	IPR000308	14-3-3 protein	Family
I, J, K, L, M I, J, K, L, M, N, O, P	IPR001309	Peptidase C14, p20 domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR011600	Peptidase C14, caspase domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR016129	Peptidase family C14A, His active site	Active Site
I, J, K, L, M I, J, K, L, M, N, O, P	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR011029	Death-like domain superfamily	Homologous Superfamily
I, J, K, L, M I, J, K, L, M, N, O, P	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
I, J, K, L, M I, J, K, L, M, N, O, P	IPR033139	Peptidase family C14A, cysteine active site	Active Site
I, J, K, L, M I, J, K, L, M, N, O, P	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR035702	Caspase-2, CARD domain	Domain
I, J, K, L, M I, J, K, L, M, N, O, P	IPR001315	CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth E], D [auth G], E [auth B], A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	Pharos: P61981	Liver Cirrhosis, Experimental pilocytic astrocytoma astrocytic tumor developmental and epileptic encephalopathy, 56 hepatocellular carcinoma malignant glioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor epilepsy exocrine pancreatic carcinoma intellectual disability lung adenocarcinoma malignant pancreatic neoplasm Parkinson disease Liver Cirrhosis, Experimental pilocytic astrocytoma astrocytic tumor developmental and epileptic encephalopathy, 56 hepatocellular carcinoma malignant glioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor epilepsy exocrine pancreatic carcinoma intellectual disability lung adenocarcinoma malignant pancreatic neoplasm Parkinson disease breast cancer glioblastoma large cell medulloblastoma malignant ependymoma oligodendroglioma
I, J, K, L, M I, J, K, L, M, N, O, P	Pharos: P42575	renal cell carcinoma intellectual disability chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor adrenal cortex carcinoma Conventional (Clear Cell) Renal Cell Carcinoma gastric carcinoma juvenile dermatomyositis malignant glioma osteosarcoma renal cell carcinoma intellectual disability chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma papillary renal cell carcinoma collecting duct carcinoma oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor adrenal cortex carcinoma Conventional (Clear Cell) Renal Cell Carcinoma gastric carcinoma juvenile dermatomyositis malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma atypical teratoid rhabdoid tumor clear cell renal carcinoma exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm ovarian cancer renal carcinoma breast cancer gastric cancer lung cancer medulloblastoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
I, J, K, L, M I, J, K, L, M, N, O, P	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.