6GFM
Crystal structure of the Escherichia coli nucleosidase PpnN (pppGpp-form)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6gfma2 | Alpha and beta proteins (a/b) | MCP/YpsA-like | MCP/YpsA-like | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
A | d6gfma1 | Alpha and beta proteins (a+b) | Ferredoxin-like | DUF4478 domain-like | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
A | d6gfma3 | Membrane and cell surface proteins and peptides | Anoctamin (TMEM16)-like | DUF3412 domain | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
A | d6gfma4 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF4478 | e6gfmA1 | A: a+b two layers | X: Uncharacterized protein VC_0899 (From Topology) | H: Uncharacterized protein VC_0899 (From Topology) | T: Uncharacterized protein VC_0899 | F: DUF4478 | ECOD (1.6) |
A | Lysine_decarbox | e6gfmA2 | A: a/b three-layered sandwiches | X: MCP/YpsA-related (From Topology) | H: MCP/YpsA-related (From Topology) | T: MCP/YpsA-related | F: Lysine_decarbox | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1850.10 | Alpha Beta | 2-Layer Sandwich | MCP/YpsA-like | MoCo carrier protein-like | CATH (utative) |
A | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11892 | Pyrimidine/purine nucleotide monophosphate nucleosidase, C-terminal (PpnN_C) | Pyrimidine/purine nucleotide monophosphate nucleosidase, C-terminal | - | Family | |
PF14793 | Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases (DUF4478) | Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases | This is an N-terminal domain found in pyrimidine/purine nucleotide 5'-monophosphate nucleosidases (PpnN) in bacteria. PpnN catalyzes the hydrolysis of the N-glycosidic bond of diverse pyrimidine and purine nucleotide 5'-monophosphates, to form ribose ... | Domain | |
PF03641 | Possible lysine decarboxylase (Lysine_decarbox) | Possible lysine decarboxylase | - | Family |