6GAY
A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49I mutant
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6gaya1 | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | (Dinoroseobacter shibae DFL 12 = DSM 16493 ) [TaxId: 398580 ], | SCOPe (2.08) |
A | d6gaya2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Dinoroseobacter shibae DFL 12 = DSM 16493 ) [TaxId: 398580 ], | SCOPe (2.08) |
B | d6gayb1 | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | (Dinoroseobacter shibae DFL 12 = DSM 16493 ) [TaxId: 398580 ], | SCOPe (2.08) |
B | d6gayb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Dinoroseobacter shibae DFL 12 = DSM 16493 ) [TaxId: 398580 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084690 | 3000471 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Flavin-binding PAS domain | 8084689 | 4003660 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | PYP-like sensor domain (PAS domain) | 8084690 | 3000471 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13426 | e6gayA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
B | PF13426 | e6gayB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR000014 | PAS domain | Domain |