6EN4
SF3b core in complex with a splicing modulator
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | d6en4d_ | Small proteins | Triquetra knot | Pre-mRNA splicing factor Phf5-like | Pre-mRNA splicing factor Phf5-like | Pre-mRNA splicing factor Phf5 / Rds3 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051197 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052535 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Triquetra zinc finger motif | 8051848 | 3002040 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03178,PF10433 | e6en4A4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
A | PF10433 | e6en4A3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
A | PF03178 | e6en4A2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
B | PF07189 | e6en4B1 | A: alpha arrays | X: RDS3 complex subunit 10 (From Topology) | H: RDS3 complex subunit 10 (From Topology) | T: RDS3 complex subunit 10 | F: PF07189 | ECOD (1.6) |
C | PF22646 | e6en4C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF22646 | ECOD (1.6) |
D | PF03660 | e6en4D1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PHD finger-like domain-containing protein 5A | F: PF03660 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
PF07189 | Splicing factor 3B subunit 10 (SF3b10) (SF3b10) | Splicing factor 3B subunit 10 (SF3b10) | - | Family | |
PF03660 | PHF5-like protein (PHF5) | PHF5-like protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018846 | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR017089 | Splicing factor 3B, subunit 5 | Family | |
IPR009846 | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | Family | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR015016 | Splicing factor 3B subunit 1 | Domain | |
IPR038737 | Splicing factor 3B subunit 1-like | Family | |
IPR005345 | PHF5-like | Family |