6EN3
Crystal structure of full length EndoS from Streptococcus pyogenes in complex with G2 oligosaccharide.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6en3A4 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF20746 | e6en3A5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Ig-like domain in endo-beta-N-acetylglucosaminidase F2 (From Topology) | T: Ig-like domain in endo-beta-N-acetylglucosaminidase F2 | F: PF20746 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6en3A1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22382 | e6en3A2 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 (From Topology) | T: Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 | F: PF22382 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6en3A3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20746 | Ig-like domain in endo-beta-N-acetylglucosaminidase F2 (EndoS_Ig-like) | Ig-like domain in endo-beta-N-acetylglucosaminidase F2 | This domain is found in Endo-beta-N-acetylglucosaminidase F2 (EndoS) from Streptococcus pyogenes (Swiss:Q48RM3) and similar sequences predominantly found in Firmicutes. EndoS is an immunomodulatory enzyme secreted by the bacteria to remove carbohydra ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR001579 | Glycosyl hydrolases family 18 (GH18) active site | Active Site | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR049410 | Endo-beta-N-acetylglucosaminidase EndoS-like, Ig-like domain | Domain | |
IPR000073 | Alpha/beta hydrolase fold-1 | Domain | |
IPR038383 | CGT/MARTX, cysteine protease (CPD) domain superfamily | Homologous Superfamily | |
IPR032074 | Actin cross-linking domain | Domain | |
IPR029058 | Alpha/Beta hydrolase fold | Homologous Superfamily | |
IPR011509 | RtxA toxin | Repeat | |
IPR020974 | CGT/MARTX, cysteine protease (CPD) domain | Domain | |
IPR049824 | RtxA toxin-like, peptidase C80 cysteine binding domain | Domain | |
IPR020972 | Dermonecrotic/RTX toxin, membrane localization domain | Domain | |
IPR048568 | RTX toxin, C-terminal repeat | Repeat | |
IPR011049 | Serralysin-like metalloprotease, C-terminal | Homologous Superfamily |