6EMZ

Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with circular intermediate DNA (CI5-DNA)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00589	e6emzA3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: PF00589	ECOD (1.6)
A	PF13102	e6emzA2	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: PF13102	ECOD (1.6)
D [auth B]	PF00589	e6emzB3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: PF00589	ECOD (1.6)
D [auth B]	PF13102	e6emzB2	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: PF13102	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth B]	PF00589	Phage integrase family (Phage_integrase)	Phage integrase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth B]	Int protein	DNA binding binding organic cyclic compound binding nucleic acid binding integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity	establishment of integrated proviral latency viral latency viral process establishment of viral latency biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction viral genome integration into host DNA nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process establishment of integrated proviral latency viral latency viral process establishment of viral latency biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction viral genome integration into host DNA nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process DNA recombination metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
B [auth C]	DNA (44-MER)	-	-	-
C [auth E]	DNA (44-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth B]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
A, D [auth B]	IPR004191	Integrase, Tn916-type, N-terminal DNA binding	Domain
A, D [auth B]	IPR010998	Integrase/recombinase, N-terminal	Homologous Superfamily
A, D [auth B]	IPR044068	Core-binding (CB) domain	Domain
A, D [auth B]	IPR002104	Integrase, catalytic domain	Domain
A, D [auth B]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily
A, D [auth B]	IPR016177	DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.