6CO2
Structure of an engineered protein (NUDT16TI) in complex with 53BP1 Tudor domains
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6co2c2 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, C-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6co2c1 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, N-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6co2d2 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, C-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6co2d1 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, N-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nudix | 8086554 | 3000098 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nudix | 8086554 | 3000098 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041640 | 3000404 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041642 | 3000404 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041640 | 3000404 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041642 | 3000404 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22327 | e6co2A1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF22327 | ECOD (1.6) |
B | PF22327 | e6co2B1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF22327 | ECOD (1.6) |
C | PF09038 | e6co2C2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF09038 | ECOD (1.6) |
D | PF09038 | e6co2D2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF09038 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.79.10 | Alpha Beta | Alpha-Beta Complex | Nucleoside Triphosphate Pyrophosphohydrolase | Nucleoside Triphosphate Pyrophosphohydrolase | CATH (4.3.0) |
B | 3.90.79.10 | Alpha Beta | Alpha-Beta Complex | Nucleoside Triphosphate Pyrophosphohydrolase | Nucleoside Triphosphate Pyrophosphohydrolase | CATH (4.3.0) |
C | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00293 | NUDIX domain (NUDIX) | NUDIX domain | - | Domain | |
PF09038 | Tumour suppressor p53-binding protein-1 Tudor (53-BP1_Tudor) | Tumour suppressor p53-binding protein-1 Tudor | Members of this family consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. This domain is essential for the recruitmen ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015797 | NUDIX hydrolase-like domain superfamily | Homologous Superfamily | |
IPR000086 | NUDIX hydrolase domain | Domain | |
IPR047252 | TP53-binding protein 1-like | Family | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR001357 | BRCT domain | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR047249 | TP53-binding protein 1-like, first BRCT domain | Domain | |
IPR047250 | TP53-binding protein 1-like, second BRCT domain | Domain | |
IPR015125 | Tumour suppressor p53-binding protein-1 Tudor domain | Domain |