6AAX

Crystal structure of TFB1M and h45 with SAM in homo sapiens

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e6aaxA2	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF00398	e6aaxA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF00398	ECOD (1.6)
C	F_UNCLASSIFIED	e6aaxC2	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF00398	e6aaxC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF00398	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (utative)
A	1.10.8.100	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (utative)
C	1.10.8.100	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00398	Ribosomal RNA adenine dimethylase (RrnaAD)	Ribosomal RNA adenine dimethylase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Dimethyladenosine transferase 1, mitochondrial	DNA binding binding organic cyclic compound binding nucleic acid binding RNA methyltransferase activity rRNA (adenine-N6,N6-)-dimethyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity N-methyltransferase activity DNA binding binding organic cyclic compound binding nucleic acid binding RNA methyltransferase activity rRNA (adenine-N6,N6-)-dimethyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity N-methyltransferase activity methyltransferase activity rRNA (adenine) methyltransferase activity catalytic activity RNA binding transcription regulator activity mitochondrial transcription factor activity	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing rRNA modification nucleobase-containing compound metabolic process cellular component biogenesis ribosome biogenesis organic substance metabolic process organic substance biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process cellular metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing rRNA modification nucleobase-containing compound metabolic process cellular component biogenesis ribosome biogenesis organic substance metabolic process organic substance biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process RNA modification biosynthetic process macromolecule modification ncRNA metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process mitochondrial gene expression RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription initiation at mitochondrial promoter nucleobase-containing compound biosynthetic process mitochondrial transcription DNA-templated transcription initiation organic cyclic compound biosynthetic process mitochondrial RNA metabolic process rRNA methylation macromolecule methylation methylation RNA methylation	membrane-bounded organelle intracellular anatomical structure mitochondrion membrane-enclosed lumen nucleoid cellular anatomical entity intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle cytoplasm membrane-bounded organelle intracellular anatomical structure mitochondrion membrane-enclosed lumen nucleoid cellular anatomical entity intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle cytoplasm mitochondrial nucleoid non-membrane-bounded organelle
B, D	RNA (28-mer)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR001737	Ribosomal RNA adenine methyltransferase KsgA/Erm	Family
A, C	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, C	IPR020598	Ribosomal RNA adenine methylase transferase, N-terminal	Domain
A, C	IPR023165	rRNA adenine dimethylase-like, C-terminal	Homologous Superfamily
A, C	IPR011530	Ribosomal RNA adenine dimethylase	Family
A, C	IPR020596	Ribosomal RNA adenine methylase transferase, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: Q8WVM0	deafness, sensorineural, autosomal-mitochondrial type osteosarcoma Familial Ménière disease ovarian cancer lung cancer subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.