5WLC

The complete structure of the small subunit processome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
L [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
M [auth LE]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)
Z [auth LR]SCOP2 FamilyUtp13-like8061269 4007179 SCOP2 (2022-06-29)
Z [auth LR]SCOP2 SuperfamilyUTPB complex component-like8061270 3002330 SCOP2 (2022-06-29)
NA [auth NF]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
NA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
OA [auth NG]SCOP2B SuperfamilyTranslational machinery components8095805 3000571 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053729 3001147 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053730 3001147 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053727 3000941 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053728 3000941 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like8053725 3000129 SCOP2B (2022-06-29)
PA [auth NH]SCOP2B SuperfamilyNucleotidyltransferase-like8053726 3000129 SCOP2B (2022-06-29)
QA [auth NI]SCOP2B SuperfamilyRRP7 C-terminal domain-like8053722 3002219 SCOP2B (2022-06-29)
QA [auth NI]SCOP2B SuperfamilyRNA-binding domain RBD8053724 3000110 SCOP2B (2022-06-29)
VA [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2022-06-29)
WA [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2022-06-29)
XA [auth SE]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
YA [auth SF]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
CB [auth SJ]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
DB [auth SK]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
F [auth L5]SCOP2 FamilyRibosomal protein S78065998 4001112 SCOP2 (2022-06-29)
F [auth L5]SCOP2 SuperfamilyRibosomal protein S78065999 3000799 SCOP2 (2022-06-29)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth L9]PF00163,PF01479e5wlcL91 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
K [auth LC]PF00380e5wlcLC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
L [auth LD]PF00366,PF16205e5wlcLD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
M [auth LE]PF00410e5wlcLE1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
M [auth LE]PF00410e5wlcLE2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
N [auth LF]PF01282e5wlcLF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
O [auth LG]PF01200e5wlcLG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
R [auth LJ]PF00400e5wlcLJ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
R [auth LJ]PF09384e5wlcLJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF09384ECOD (1.6)
S [auth LK]F_UNCLASSIFIEDe5wlcLK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: F_UNCLASSIFIEDECOD (1.6)
T [auth LL]F_UNCLASSIFIEDe5wlcLL2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
T [auth LL]PF04003e5wlcLL1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
U [auth LM]PF12397e5wlcLM1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF12397ECOD (1.6)
V [auth LN]F_UNCLASSIFIEDe5wlcLN2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
V [auth LN]PF00400e5wlcLN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF00400e5wlcLO2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF04003e5wlcLO3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
Y [auth LQ]PF00400e5wlcLQ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth LQ]PF04003e5wlcLQ3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
DA [auth LV]F_UNCLASSIFIEDe5wlcLV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
EA [auth LW]PF00400,PF08149e5wlcLW1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400,PF08149ECOD (1.6)
HA [auth LZ]PF00163,PF01479e5wlcLZ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
NA [auth NF]PF08069e5wlcNF2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
NA [auth NF]PF00312e5wlcNF1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
D [auth L3]PF00416e5wlcL31 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
OA [auth NG]PF00411e5wlcNG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
PA [auth NH]PF17403e5wlcNH3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17403ECOD (1.6)
PA [auth NH]PF17406e5wlcNH6 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17406ECOD (1.6)
PA [auth NH]PF17404e5wlcNH2 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17404ECOD (1.6)
PA [auth NH]PF17407e5wlcNH1 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17407ECOD (1.6)
PA [auth NH]PF03813e5wlcNH4 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF03813ECOD (1.6)
PA [auth NH]PF17405e5wlcNH5 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF17405ECOD (1.6)
QA [auth NI]PF17799e5wlcNI1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF17799ECOD (1.6)
RA [auth NJ]F_UNCLASSIFIEDe5wlcNJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
SA [auth NK]PF17903e5wlcNK2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
SA [auth NK]PF21800e5wlcNK1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF21800ECOD (1.6)
TA [auth SA]PF01798e5wlcSA2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: PF01798ECOD (1.6)
TA [auth SA]PF01798e5wlcSA3 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF01798ECOD (1.6)
TA [auth SA]PF08156e5wlcSA1 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF08156ECOD (1.6)
VA [auth SC]PF01269e5wlcSC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
WA [auth SD]PF01269e5wlcSD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
XA [auth SE]PF01248e5wlcSE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
YA [auth SF]PF01248e5wlcSF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
ZA [auth SG]PF00400e5wlcSG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
E [auth L4]PF00900e5wlcL41 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth L4]PF00467,PF16121e5wlcL42 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth L4]PF00900,PF01479,PF08071e5wlcL43 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
AB [auth SH]PF01137e5wlcSH2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
AB [auth SH]PF05189e5wlcSH1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
CB [auth SJ]PF03587e5wlcSJ1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
DB [auth SK]PF03587e5wlcSK1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
GB [auth SN]PF00687e5wlcSN1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
GB [auth SN]PF00687e5wlcSN2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
HB [auth SO]PF17903e5wlcSO1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
HB [auth SO]PF22891e5wlcSO2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)
KB [auth SR]PF00164e5wlcSR1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
F [auth L5]PF00177e5wlcL51 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
RB [auth SZ]PF05291e5wlcSZ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF05291ECOD (1.6)
G [auth L6]PF01092e5wlcL61 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth L7]PF01251e5wlcL71 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
I [auth L8]PF01201e5wlcL81 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
L [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth LE]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth LG]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth LI]PF10395Utp8 family (Utp8)Utp8 family- Family
R [auth LJ]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
T [auth LL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
U [auth LM]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth LO]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
W [auth LO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth LP]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Family
Y [auth LQ]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
Y [auth LQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
AA [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth LT]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.Domain
BA [auth LT]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth LU]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
CA [auth LU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth LW]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domainThis C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [1].Domain
EA [auth LW]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth LX],
GA [auth LY]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminal- Family
HA [auth LZ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
HA [auth LZ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IA [auth NA]PF04006Mpp10 protein (Mpp10)Mpp10 protein- Family
JA [auth NB]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.Domain
LA [auth ND]PF08297U3 snoRNA associated (U3_snoRNA_assoc)U3 snoRNA associated- Family
NA [auth NF]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
NA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
D [auth L3]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
OA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PA [auth NH]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
PA [auth NH]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
PA [auth NH]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
QA [auth NI]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1].Domain
QA [auth NI]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2].Domain
SA [auth NK]PF17903Krr1 KH1 domain (KH_8)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1].Domain
SA [auth NK]PF21800KRR1 small subunit processome component, second KH domain (KRR1-like_KH2)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences.Domain
TA [auth SA]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
TA [auth SA]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
UA [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
VA [auth SC],
WA [auth SD]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain
XA [auth SE],
YA [auth SF]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
ZA [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth L4]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
AB [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
AB [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
BB [auth SI]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1].Domain
BB [auth SI]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
CB [auth SJ],
DB [auth SK]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
EB [auth SL]PF04900Fcf1 (Fcf1)Fcf1- Family
FB [auth SM]PF04427Brix domain (Brix)Brix domain- Domain
GB [auth SN]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
HB [auth SO]PF17903Krr1 KH1 domain (KH_8)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1].Domain
KB [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LB [auth SS]PF04615Utp14 protein (Utp14)Utp14 protein- Family
MB [auth ST]PF04147Nop14-like family (Nop14)Nop14-like family- Family
NB [auth SU]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
OB [auth SV]PF17075Regular of rDNA transcription protein 14 (RRT14)Regular of rDNA transcription protein 14- Family
QB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
RB [auth SZ]PF05291Bystin (Bystin)Bystin- Family
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L0]5' ETS---
J [auth L9]rpS9_uS4
K [auth LC]rpS16_uS9
L [auth LD]rpS11_uS17
M [auth LE]rpS22_uS8
N [auth LF]rpS24_eS24
O [auth LG]rpS28_eS28
P [auth LH]Utp17
Q [auth LI]Utp8
R [auth LJ]Utp15
S [auth LK]Utp9
B [auth L1]18S pre-rRNA---
T [auth LL]Utp5-
U [auth LM]Utp10
V [auth LN]Utp4-
W [auth LO]Utp1
X [auth LP]Utp6
Y [auth LQ]Utp12
Z [auth LR]Utp13
AA [auth LS]Utp18-
BA [auth LT]Utp21-
CA [auth LU]Sof1
C [auth L2]U3 snoRNA---
DA [auth LV]Enp2-
EA [auth LW]Utp7-
FA [auth LX],
GA [auth LY]
Kre33
HA [auth LZ]Imp3
IA [auth NA]Mpp10
JA [auth NB]Sas10
KA [auth NC]Lcp5-
LA [auth ND]Bud21
MA [auth NE]Faf1-
NA [auth NF]rpS13_uS15
D [auth L3]rpS18_uS13
OA [auth NG]rpS14_uS11
PA [auth NH]Utp22
QA [auth NI]Rrp7
RA [auth NJ]Rrp5
SA [auth NK]Krr1
TA [auth SA]Nop56
UA [auth SB]Nop58
VA [auth SC],
WA [auth SD]
Nop1
XA [auth SE],
YA [auth SF]
Snu13
ZA [auth SG]Rrp9
E [auth L4]rpS4_eS4
AB [auth SH]Rcl1
BB [auth SI]Bms1
CB [auth SJ],
DB [auth SK]
Emg1
EB [auth SL]Utp24
FB [auth SM]Imp4
GB [auth SN]Utp30
HB [auth SO]Pno1
IB [auth SP]Utp20---
JB [auth SQ]Fcf2-
KB [auth SR]rpS23_uS12
F [auth L5]rpS5_uS7
LB [auth SS]Utp14
MB [auth ST]Nop14
NB [auth SU]Noc4-
OB [auth SV]Rrt14- -
PB [auth SX]Unassigned peptides---
QB [auth SY]Utp11-
RB [auth SZ]Enp1
G [auth L6]rpS6_eS6
H [auth L7]rpS7_eS7
I [auth L8]rpS8_eS8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
K [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth LC]IPR000754Small ribosomal subunit protein uS9Family
K [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth LD]IPR000266Small ribosomal subunit protein uS17Family
L [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
M [auth LE]IPR000630Small ribosomal subunit protein uS8Family
M [auth LE]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
M [auth LE]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
P [auth LH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth LI]IPR018843U3 small nucleolar RNA-associated protein 8Family
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR007148Small-subunit processome, Utp12Domain
T [auth LL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth LL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR021133HEAT, type 2Repeat
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
W [auth LO]IPR019775WD40 repeat, conserved siteConserved Site
W [auth LO]IPR007148Small-subunit processome, Utp12Domain
W [auth LO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
W [auth LO]IPR001680WD40 repeatRepeat
W [auth LO]IPR020472G-protein beta WD-40 repeatRepeat
W [auth LO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR027145Periodic tryptophan protein 2Family
X [auth LP]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth LP]IPR003107HAT (Half-A-TPR) repeatRepeat
X [auth LP]IPR013949U3 small nucleolar RNA-associated protein 6Family
Y [auth LQ]IPR019775WD40 repeat, conserved siteConserved Site
Y [auth LQ]IPR007148Small-subunit processome, Utp12Domain
Y [auth LQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR001680WD40 repeatRepeat
Y [auth LQ]IPR020472G-protein beta WD-40 repeatRepeat
Y [auth LQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth LR]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
Z [auth LR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR001680WD40 repeatRepeat
Z [auth LR]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth LR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR001680WD40 repeatRepeat
AA [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
BA [auth LT]IPR007319Small-subunit processome, Utp21Domain
BA [auth LT]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth LT]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth LT]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth LT]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
BA [auth LT]IPR001680WD40 repeatRepeat
BA [auth LT]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR001680WD40 repeatRepeat
CA [auth LU]IPR007287Sof1-like proteinDomain
CA [auth LU]IPR020472G-protein beta WD-40 repeatRepeat
CA [auth LU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LV]IPR001680WD40 repeatRepeat
DA [auth LV]IPR040382Nucleolar protein 10/Enp2Family
DA [auth LV]IPR012580NUC153Domain
DA [auth LV]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth LV]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR019775WD40 repeat, conserved siteConserved Site
EA [auth LW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR012952BING4, C-terminal domainDomain
EA [auth LW]IPR001680WD40 repeatRepeat
EA [auth LW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth LW]IPR040315WD repeat-containing protein WDR46/Utp7Family
FA [auth LX],
GA [auth LY]
IPR027992Possible tRNA binding domainDomain
FA [auth LX],
GA [auth LY]
IPR032672TmcA/NAT10/Kre33Family
FA [auth LX],
GA [auth LY]
IPR013562tRNA(Met) cytidine acetyltransferase TmcA, N-terminalDomain
FA [auth LX],
GA [auth LY]
IPR033688RNA cytidine acetyltransferase NAT10Family
FA [auth LX],
GA [auth LY]
IPR000182GNAT domainDomain
FA [auth LX],
GA [auth LY]
IPR007807Helicase domainDomain
FA [auth LX],
GA [auth LY]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth LZ]IPR002942RNA-binding S4 domainDomain
HA [auth LZ]IPR022801Small ribosomal subunit protein uS4Family
HA [auth LZ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HA [auth LZ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IA [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
JA [auth NB]IPR018972Sas10 C-terminal domainDomain
JA [auth NB]IPR007146Sas10/Utp3/C1DFamily
KA [auth NC]IPR007146Sas10/Utp3/C1DFamily
LA [auth ND]IPR013268U3 small nucleolar RNA-associated protein 16Family
NA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
NA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
NA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
NA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
D [auth L3]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
D [auth L3]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
D [auth L3]IPR001892Small ribosomal subunit protein uS13Family
D [auth L3]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
OA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
OA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth NH]IPR035367Nrap protein, domain 2Domain
PA [auth NH]IPR035368Nrap protein, domain 3Domain
PA [auth NH]IPR035370Nrap protein, domain 5Domain
PA [auth NH]IPR005554NOL6/Upt22Family
PA [auth NH]IPR035369Nrap protein, domain 4Domain
PA [auth NH]IPR035082Nrap protein domain 1Domain
PA [auth NH]IPR035371Nrap protein, domain 6Domain
QA [auth NI]IPR040446Ribosomal RNA-processing protein 7Family
QA [auth NI]IPR040447Rrp7, RRM-like N-terminal domainDomain
QA [auth NI]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
RA [auth NJ]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
RA [auth NJ]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
RA [auth NJ]IPR003029S1 domainDomain
RA [auth NJ]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
RA [auth NJ]IPR003107HAT (Half-A-TPR) repeatRepeat
RA [auth NJ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RA [auth NJ]IPR045209rRNA biogenesis protein Rrp5Family
SA [auth NK]IPR004087K Homology domainDomain
SA [auth NK]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
SA [auth NK]IPR041174KRR1 small subunit processome component, first KH domainDomain
SA [auth NK]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
SA [auth NK]IPR048548KRR1 small subunit processome component, second KH domainDomain
SA [auth NK]IPR024166Ribosomal RNA assembly KRR1Family
SA [auth NK]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
TA [auth SA]IPR042239Nop, C-terminal domainHomologous Superfamily
TA [auth SA]IPR012974Nucleolar protein 58/56, N-terminalDomain
TA [auth SA]IPR002687Nop domainDomain
TA [auth SA]IPR012976NOSICDomain
TA [auth SA]IPR036070Nop domain superfamilyHomologous Superfamily
TA [auth SA]IPR045056Nucleolar protein Nop56/Nop58Family
UA [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
UA [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
UA [auth SB]IPR002687Nop domainDomain
UA [auth SB]IPR012976NOSICDomain
UA [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
UA [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
VA [auth SC],
WA [auth SD]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
VA [auth SC],
WA [auth SD]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
VA [auth SC],
WA [auth SD]
IPR020813Fibrillarin, conserved siteConserved Site
XA [auth SE],
YA [auth SF]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
XA [auth SE],
YA [auth SF]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
XA [auth SE],
YA [auth SF]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
XA [auth SE],
YA [auth SF]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
XA [auth SE],
YA [auth SF]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
ZA [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ZA [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
ZA [auth SG]IPR001680WD40 repeatRepeat
ZA [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
AB [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
AB [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
AB [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
AB [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
AB [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
AB [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
AB [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
AB [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
BB [auth SI]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
BB [auth SI]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
BB [auth SI]IPR003959ATPase, AAA-type, coreDomain
BB [auth SI]IPR012948AARP2CNDomain
BB [auth SI]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth SI]IPR030387Bms1/Tsr1-type G domainDomain
BB [auth SI]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
CB [auth SJ],
DB [auth SK]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
CB [auth SJ],
DB [auth SK]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
CB [auth SJ],
DB [auth SK]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
EB [auth SL]IPR002716PIN domainDomain
EB [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
EB [auth SL]IPR006984rRNA-processing protein Fcf1/Utp23Family
EB [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
FB [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
FB [auth SM]IPR007109Brix domainDomain
GB [auth SN]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
GB [auth SN]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
HB [auth SO]IPR041174KRR1 small subunit processome component, first KH domainDomain
HB [auth SO]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
JB [auth SQ]IPR039883Fcf2/DNTTIP2Family
JB [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
KB [auth SR]IPR006032Small ribosomal subunit protein uS12Family
KB [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KB [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
LB [auth SS]IPR006709Small-subunit processome, Utp14Family
MB [auth ST]IPR007276Nucleolar protein 14Family
NB [auth SU]IPR027193Nucleolar complex protein 4Family
NB [auth SU]IPR005612CCAAT-binding factorDomain
OB [auth SV]IPR031404Regulator of rDNA transcription 14Family
QB [auth SY]IPR007144Small-subunit processome, Utp11Family
RB [auth SZ]IPR007955BystinFamily
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site