5WLC

The complete structure of the small subunit processome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The complete structure of the small-subunit processome.

Barandun, J.Chaker-Margot, M.Hunziker, M.Molloy, K.R.Chait, B.T.Klinge, S.

(2017) Nat. Struct. Mol. Biol. 24: 944-953

  • DOI: 10.1038/nsmb.3472

  • PubMed Abstract: 
  • The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which p ...

    The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which provides an essentially complete near-atomic model of this assembly. In this nucleolar superstructure, 51 ribosome-assembly factors and two RNAs encapsulate the 18S rRNA precursor and 15 ribosomal proteins in a state that precedes pre-rRNA cleavage at site A1. Extended flexible proteins are employed to connect distant sites in this particle. Molecular mimicry and steric hindrance, as well as protein- and RNA-mediated RNA remodeling, are used in a concerted fashion to prevent the premature formation of the central pseudoknot and its surrounding elements within the small ribosomal subunit.


    Organizational Affiliation

    Laboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, New York, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
rpS18_uS13
L3
146Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS18A
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX55
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
rpS4_eS4
L4
261Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS4A (RPS7B)
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX35
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
rpS5_uS7
L5
225Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: RPS5
Find proteins for A0A1L4AA68 (Saccharomyces cerevisiae)
Go to Gene View: RPS5
Go to UniProtKB:  A0A1L4AA68
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
rpS6_eS6
L6
236Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS6A (RPS101, RPS10B)
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX37
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
rpS7_eS7
L7
190Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS7A (RPS30)
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P26786
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
rpS8_eS8
L8
200Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS8A (RPS14A)
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX39
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
rpS9_uS4
L9
197Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O13516
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
rpS16_uS9
LC
143Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS16A (RP61R)
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX51
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
rpS11_uS17
LD
156Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS11A (RPS18A)
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX47
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
rpS22_uS8
LE
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0W1
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
rpS24_eS24
LF
135Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS24A (RPS24EA)
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX31
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
rpS28_eS28
LG
67Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS28A (RPS33, RPS33A)
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q3E7X9
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
Utp17
LH
896Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NAN1 (UTP17)
Find proteins for Q02931 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02931
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
Utp8
LI
713Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP8
Find proteins for P53276 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53276
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
Utp15
LJ
513Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP15
Find proteins for Q04305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: UTP15
Go to UniProtKB:  Q04305
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
Utp9
LK
575Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP9
Find proteins for P38882 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38882
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
Utp5
LL
643Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP5
Find proteins for Q04177 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q04177
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
Utp10
LM
1769Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP10
Find proteins for P42945 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P42945
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
Utp4
LN
776Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP4
Find proteins for Q06679 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: UTP4
Go to UniProtKB:  Q06679
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
Utp1
LO
923Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: PWP2 (UTP1)
Find proteins for P25635 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: PWP2
Go to UniProtKB:  P25635
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
Utp6
LP
440Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP6
Find proteins for Q02354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: UTP6
Go to UniProtKB:  Q02354
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
Utp12
LQ
943Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: DIP2 (UTP12)
Find proteins for Q12220 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12220
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
Utp13
LR
817Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP13
Find proteins for Q05946 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q05946
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
Utp18
LS
594Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP18
Find proteins for P40362 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: UTP18
Go to UniProtKB:  P40362
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
Utp21
LT
939Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP21
Find proteins for Q06078 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q06078
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
Sof1
LU
489Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SOF1
Find proteins for P33750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P33750
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
Enp2
LV
707Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ENP2
Find proteins for P48234 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P48234
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
Utp7
LW
554Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP7 (KRE31)
Find proteins for P40055 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P40055
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
Kre33
LX, LY
1056Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: KRE33 (NAT10, RRA1)
EC: 2.3.1.-
Find proteins for P53914 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53914
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
Imp3
LZ
183Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: IMP3
Find proteins for P32899 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: IMP3
Go to UniProtKB:  P32899
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
Mpp10
NA
593Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MPP10
Find proteins for P47083 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P47083
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
Sas10
NB
610Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SAS10 (UTP3)
Find proteins for Q12136 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12136
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
Lcp5
NC
357Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: LCP5
Find proteins for P40079 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P40079
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
Bud21
ND
214Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: BUD21 (UTP16)
Find proteins for Q08492 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q08492
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
Faf1
NE
346Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: FAF1
Find proteins for P40546 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: FAF1
Go to UniProtKB:  P40546
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
rpS13_uS15
NF
151Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS13
Go to UniProtKB:  P05756
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
rpS14_uS11
NG
137Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS14A (CRY1, RPL59)
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P06367
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
Utp22
NH
1237Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP22
Find proteins for P53254 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53254
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
Rrp7
NI
297Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP7
Find proteins for P25368 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P25368
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
Rrp5
NJ
1729Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP5 (FMI1)
Find proteins for Q05022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q05022
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
Krr1
NK
316Saccharomyces cerevisiae (strain RM11-1a)Mutation(s): 0 
Gene Names: KRR1
Find proteins for B3LU25 (Saccharomyces cerevisiae (strain RM11-1a))
Go to Gene View: KRR1
Go to UniProtKB:  B3LU25
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
Nop56
SA
504Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NOP56 (SIK1)
Find proteins for Q12460 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: NOP56
Go to UniProtKB:  Q12460
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
Nop58
SB
511Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NOP58 (NOP5)
Find proteins for Q12499 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: NOP58
Go to UniProtKB:  Q12499
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
Nop1
SC, SD
327Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NOP1 (LOT3)
EC: 2.1.1.-
Find proteins for P15646 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P15646
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
Snu13
SE, SF
126Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SNU13
Find proteins for P39990 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: SNU13
Go to UniProtKB:  P39990
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
Rrp9
SG
573Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP9
Find proteins for Q06506 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RRP9
Go to UniProtKB:  Q06506
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
Rcl1
SH
367Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RCL1 (RTC1)
Find proteins for Q08096 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RCL1
Go to UniProtKB:  Q08096
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
Bms1
SI
1184Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: BMS1
Find proteins for Q08965 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: BMS1
Go to UniProtKB:  Q08965
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
Emg1
SJ, SK
252Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: EMG1 (NEP1)
EC: 2.1.1.260
Find proteins for Q06287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: EMG1
Go to UniProtKB:  Q06287
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
Utp24
SL
189Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: FCF1
Find proteins for Q05498 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: FCF1
Go to UniProtKB:  Q05498
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
Imp4
SM
290Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: IMP4
Find proteins for P53941 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: IMP4
Go to UniProtKB:  P53941
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
Utp30
SN
274Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP30
Find proteins for P36144 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P36144
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
Pno1
SO
274Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: PNO1 (DIM2, RRP20)
Find proteins for Q99216 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: PNO1
Go to UniProtKB:  Q99216
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
Utp20
SP
982N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
Fcf2
SQ
217Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: FCF2
Find proteins for Q12035 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q12035
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
rpS23_uS12
SR
145Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)Mutation(s): 0 
Gene Names: RPS23A
Find proteins for P0CY39 (Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630))
Go to UniProtKB:  P0CY39
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
Utp14
SS
898Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UTP14
Find proteins for Q04500 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q04500
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
Nop14
ST
792Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NOP14 (UTP2)
Find proteins for Q99207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: NOP14
Go to UniProtKB:  Q99207
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
Noc4
SU
552Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NOC4 (UTP19)
Find proteins for Q06512 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q06512
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
Rrt14
SV
206Saccharomyces cerevisiae (strain AWRI1631)Mutation(s): 0 
Gene Names: RRT14
Find proteins for B5VKI1 (Saccharomyces cerevisiae (strain AWRI1631))
Go to UniProtKB:  B5VKI1
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
Unassigned peptides
SX
103N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
Utp11
SY
250Saccharomyces cerevisiae (strain AWRI1631)Mutation(s): 0 
Gene Names: UTP11
Find proteins for B5VM59 (Saccharomyces cerevisiae (strain AWRI1631))
Go to Gene View: UTP11
Go to UniProtKB:  B5VM59
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
Enp1
SZ
483Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ENP1 (MEG1)
Find proteins for P38333 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38333
Entity ID: 1
MoleculeChainsLengthOrganism
5' ETSL0700Saccharomyces cerevisiae BY4741
Entity ID: 2
MoleculeChainsLengthOrganism
18S pre-rRNAL11807Saccharomyces cerevisiae BY4741
Entity ID: 3
MoleculeChainsLengthOrganism
U3 snoRNAL2333Saccharomyces cerevisiae BY4741
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
SL
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
L3, LH, LI, LK, LM, LN, LP, LQ, LR, LX, LY, NB, ND, NE, SA, SB, SI, SP, SS, ST, SU, SV, SX
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States1DP2GM123459
European Molecular Biology OrganizationGermanyALTF 51-2014
Swiss National Science FoundationSwitzerland155515
Natural Sciences and Engineering Research Council (Canada)CanadaPGS-D
Human Frontier Science ProgramFrance--

Revision History 

  • Version 1.0: 2017-09-27
    Type: Initial release
  • Version 1.1: 2017-10-11
    Type: Database references
  • Version 1.2: 2017-10-18
    Type: Author supporting evidence
  • Version 1.3: 2017-11-22
    Type: Database references