5ZQC
Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Ampicillin bound form
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5zqca_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
B | d5zqcb_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
C | d5zqcc_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
D | d5zqcd_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8080748 | 3001604 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8080748 | 3001604 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8080748 | 3001604 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | beta-lactamase/transpeptidase-like | 8080748 | 3001604 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_S11_1st_1 | e5zqcA2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_1st_1 | ECOD (1.6) |
A | Peptidase_S11_2nd | e5zqcA1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_2nd | ECOD (1.6) |
B | Peptidase_S11_1st_1 | e5zqcB1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_1st_1 | ECOD (1.6) |
B | Peptidase_S11_2nd | e5zqcB2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_2nd | ECOD (1.6) |
C | Peptidase_S11_1st_1 | e5zqcC2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_1st_1 | ECOD (1.6) |
C | Peptidase_S11_2nd | e5zqcC1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_2nd | ECOD (1.6) |
D | Peptidase_S11_1st_1 | e5zqcD2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_1st_1 | ECOD (1.6) |
D | Peptidase_S11_2nd | e5zqcD1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00768 | D-alanyl-D-alanine carboxypeptidase (Peptidase_S11) | D-alanyl-D-alanine carboxypeptidase | - | Domain | |
PF00144 | Beta-lactamase (Beta-lactamase) | Beta-lactamase | This family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. | Domain |