Annotations: 5ZE3

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01186	e5ze3A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01186	ECOD (1.6)
A	PF00530	e5ze3A3	A: a+b complex topology	X: SRCR-like	H: SRCR-like (From Topology)	T: SRCR-like	F: PF00530	ECOD (1.6)
B	PF01186	e5ze3B3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF01186	ECOD (1.6)
B	PF00530	e5ze3B1	A: a+b complex topology	X: SRCR-like	H: SRCR-like (From Topology)	T: SRCR-like	F: PF00530	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01186	Lysyl oxidase (Lysyl_oxidase)	Lysyl oxidase	-	Family
A, B	PF00530	Scavenger receptor cysteine-rich domain (SRCR)	Scavenger receptor cysteine-rich domain	These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Lysyl oxidase homolog 2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding transition metal ion binding copper ion binding oligosaccharide binding carbohydrate binding oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity catalytic activity, acting on a protein oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor cation binding ion binding binding calcium ion binding metal ion binding small molecule binding transition metal ion binding copper ion binding oligosaccharide binding carbohydrate binding oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity catalytic activity, acting on a protein oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor protein-lysine 6-oxidase activity catalytic activity	regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process cell population proliferation endothelial cell proliferation epithelial cell proliferation response to copper ion response to stimulus response to metal ion response to chemical response to inorganic substance organonitrogen compound metabolic process macromolecule modification protein metabolic process protein modification process regulation of epithelial to mesenchymal transition multicellular organismal process regulation of developmental process cellular developmental process positive regulation of biological process positive regulation of epithelial to mesenchymal transition regulation of cell differentiation mesenchyme development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of multicellular organismal process positive regulation of cellular process developmental process animal organ development tissue development epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation epithelium migration tissue migration endothelial cell migration ameboidal-type cell migration epithelial cell migration cell migration cell motility peptidyl-lysine modification peptidyl-lysine oxidation protein oxidation peptidyl-amino acid modification regulation of cartilage development regulation of chondrocyte differentiation connective tissue development positive regulation of chondrocyte differentiation multicellular organism development skeletal system development system development regulation of multicellular organismal development chondrocyte differentiation positive regulation of cartilage development cartilage development blood vessel morphogenesis tube development angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development cellular component organization collagen fibril organization extracellular matrix organization cellular component organization or biogenesis supramolecular fiber organization extracellular structure organization external encapsulating structure organization protein-DNA complex organization protein-containing complex organization chromatin organization heterochromatin organization response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus negative regulation of developmental process regulation of stem cell population maintenance stem cell population maintenance negative regulation of stem cell population maintenance maintenance of cell number negative regulation of multicellular organismal process transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II	membrane cellular anatomical entity basement membrane cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle membrane cellular anatomical entity basement membrane cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle extracellular region extracellular space endoplasmic reticulum cytoplasm endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR019828	Lysyl oxidase, conserved site	Conserved Site
A, B	IPR017448	SRCR-like domain	Domain
A, B	IPR001695	Lysyl oxidase	Family
A, B	IPR001190	SRCR domain	Domain
A, B	IPR036772	SRCR-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9Y4K0	primary biliary cholangitis Wilson disease esophageal squamous cell carcinoma hepatitis C virus infection Liver Cirrhosis, Experimental hepatitis B virus infection breast cancer breast carcinoma interstitial cystitis malignant glioma malignant pancreatic neoplasm medulloblastoma adrenal cortex carcinoma non-small cell lung carcinoma atypical teratoid rhabdoid tumor primary biliary cholangitis Wilson disease esophageal squamous cell carcinoma hepatitis C virus infection Liver Cirrhosis, Experimental hepatitis B virus infection breast cancer breast carcinoma interstitial cystitis malignant glioma malignant pancreatic neoplasm medulloblastoma adrenal cortex carcinoma non-small cell lung carcinoma atypical teratoid rhabdoid tumor pancreatic ductal adenocarcinoma transitional cell carcinoma esophageal adenocarcinoma Gaucher disease juvenile dermatomyositis lung cancer malignant mesothelioma age-related macular degeneration osteosarcoma Becker muscular dystrophy pilocytic astrocytoma primitive neuroectodermal tumor cystic fibrosis ulcerative colitis glioblastoma large cell medulloblastoma malignant ependymoma ovarian cancer polycystic ovary syndrome sinusitis Duchenne muscular dystrophy wet macular degeneration gastric carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.