Annotations: 5XDA

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ubiquitin-like	8041140	3000157	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e5xdaA1	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF22084	e5xdaA2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
A	PF07910	e5xdaA3	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
B	F_UNCLASSIFIED	e5xdaB2	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF22084	e5xdaB3	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
B	PF07910	e5xdaB1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
C	F_UNCLASSIFIED	e5xdaC3	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF22084	e5xdaC2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
C	PF07910	e5xdaC1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
D	F_UNCLASSIFIED	e5xdaD1	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
D	PF22084	e5xdaD2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
D	PF07910	e5xdaD3	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
E	F_UNCLASSIFIED	e5xdaE2	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
E	PF22084	e5xdaE1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
E	PF07910	e5xdaE3	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
F	F_UNCLASSIFIED	e5xdaF1	A: a+b two layers	X: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	H: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 (From Topology)	T: N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2	F: F_UNCLASSIFIED	ECOD (1.6)
F	PF22084	e5xdaF2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF22084	ECOD (1.6)
F	PF07910	e5xdaF3	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF07910	ECOD (1.6)
G	PF03671	e5xdaG1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)
H	PF03671	e5xdaH1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)
I	PF03671	e5xdaI1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)
J	PF03671	e5xdaJ1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)
K	PF03671	e5xdaK1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)
L	PF03671	e5xdaL1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF03671	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
H	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
I	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
J	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
K	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
L	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF20908	Ubiquitin-fold modifier 1 specific protease 2, N-terminal (UfSP2_N)	Ubiquitin-fold modifier 1 specific protease 2, N-terminal	This domain is found at the N-terminal end of the eukaryotic protein Ubiquitin-fold modifier 1 (Ufm1) specific protease 2 (UfSP2). UfSP2 is a cysteine protease which recognises and hydrolyses the peptide bond at the C-terminal Gly residue of the prot ...	This domain is found at the N-terminal end of the eukaryotic protein Ubiquitin-fold modifier 1 (Ufm1) specific protease 2 (UfSP2). UfSP2 is a cysteine protease which recognises and hydrolyses the peptide bond at the C-terminal Gly residue of the protein Ufm1, a ubiquitin- like modifier. This protein is organised into two domains: the catalytic C-terminal (Pfam:PF07910) and a N-terminal showing a six- stranded beta-sheet with five helices. This entry represents the most N-terminal beta-strand [1,2].	Domain
A, B, C, D, E A, B, C, D, E, F	PF07910	Peptidase family C78 (Peptidase_C78)	Peptidase family C78	-	Family
G, H, I, J, K G, H, I, J, K, L	PF03671	Ubiquitin fold modifier 1 protein (Ufm1)	Ubiquitin fold modifier 1 protein	This is a family of short ubiquitin-like proteins, that is like neither type-1 or type-2. It is a ubiquitin-fold modifier 1 (Ufm1) that is synthesised in a precursor form of 85 amino-acid residues. In humans the enzyme for Ufm1 is Uba5 and the conjug ...	This is a family of short ubiquitin-like proteins, that is like neither type-1 or type-2. It is a ubiquitin-fold modifier 1 (Ufm1) that is synthesised in a precursor form of 85 amino-acid residues. In humans the enzyme for Ufm1 is Uba5 and the conjugating enzyme is Ufc1. Prior to activation by Uba5 the extra two amino acids at the C-terminal region of the human pro-Ufm1 protein are removed to expose Gly whose residue is necessary for conjugation to target molecule(s). The mature Ufm1 is conjugated to yet unidentified endogenous proteins,[1]. While Ubiquitin and many Ubls possess the conserved C-terminal di-glycine that is adenylated by each specific E1 or E1-like enzyme, respectively, in an ATP-dependent manner, Ufm1(1-83) possesses a single glycine at its C-terminus, which is followed by a Ser-Cys dipeptide in the precursor form of Ufm1. The C-terminally processed Ufm1(1-83) is specifically activated by Uba5, an E1-like enzyme, and then transferred to its cognate Ufc1, an E2-like enzyme [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Ufm1-specific protease	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity deUFMylase activity catalytic activity	chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical chemotaxis positive regulation of locomotion regulation of biological process response to stimulus regulation of response to external stimulus biological regulation positive regulation of biological process response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical regulation of locomotion locomotion protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to non-motile cilium organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process response to organic substance response to alcohol response to oxygen-containing compound response to ethanol	intracellular anatomical structure perinuclear region of cytoplasm cytoplasm cellular anatomical entity protein-containing complex membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network intracellular anatomical structure perinuclear region of cytoplasm cytoplasm cellular anatomical entity protein-containing complex membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
G, H, I, J, K G, H, I, J, K, L	Ubiquitin-fold modifier 1	-	organonitrogen compound metabolic process primary metabolic process protein ufmylation organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR049387	Ubiquitin-fold modifier 1 specific protease 2-like, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012462	UfSP1/2/DUB, catalytic domain	Domain
G, H, I, J, K G, H, I, J, K, L	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
G, H, I, J, K G, H, I, J, K, L	IPR005375	Ubiquitin-fold modifier 1	Family