5XAZ

Crystal structure of full length native tylp, a tetr regulator from streptomyces fradiae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
B [auth H]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
B [auth H]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00440	e5xazA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
A	F_UNCLASSIFIED	e5xazA2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth H]	PF00440	e5xazH2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
B [auth H]	PF21935	e5xazH1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: PF21935	ECOD (1.6)
C [auth B]	PF00440	e5xazB2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e5xazB1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth C]	PF00440	e5xazC1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
D [auth C]	PF21935	e5xazC2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: PF21935	ECOD (1.6)
E [auth D]	PF00440	e5xazD2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
E [auth D]	F_UNCLASSIFIED	e5xazD1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth E]	PF00440	e5xazE2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
F [auth E]	PF21935	e5xazE1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: PF21935	ECOD (1.6)
G [auth F]	PF00440	e5xazF1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
G [auth F]	F_UNCLASSIFIED	e5xazF2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
H [auth G]	PF00440	e5xazG2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF00440	ECOD (1.6)
H [auth G]	PF21935	e5xazG1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: PF21935	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	Gamma-butyrolactone receptor protein	DNA binding binding organic cyclic compound binding nucleic acid binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR047923	A-factor receptor protein-like	Family
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR009057	Homeobox-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.