Annotations: 5WVE

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cytochrome c	8036431	3000815	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	DEATH domain	8037979	3000069	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	DEATH domain	8037989	3000069	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	DEATH domain	8037989	3000069	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	DEATH domain	8037989	3000069	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	DEATH domain	8037989	3000069	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	DEATH domain	8037989	3000069	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ANAPC4_WD40_10	e5wveA7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
A	ANAPC4_WD40_10	e5wveA8	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
A	KOG4658_like	e5wveA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
A	NB-ARC_2nd	e5wveA5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
A	EUF08240	e5wveA6	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
A	NB-ARC_1st	e5wveA4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
C	ANAPC4_WD40_10	e5wveC6	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
C	ANAPC4_WD40_10	e5wveC7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
C	KOG4658_like	e5wveC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
C	NB-ARC_2nd	e5wveC2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
C	EUF08240	e5wveC5	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
C	NB-ARC_1st	e5wveC4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
E	ANAPC4_WD40_10	e5wveE5	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
E	ANAPC4_WD40_10	e5wveE7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
E	KOG4658_like	e5wveE2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
E	NB-ARC_2nd	e5wveE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
E	EUF08240	e5wveE3	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
E	NB-ARC_1st	e5wveE6	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
G	ANAPC4_WD40_10	e5wveG7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
G	ANAPC4_WD40_10	e5wveG8	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
G	KOG4658_like	e5wveG3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
G	NB-ARC_2nd	e5wveG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
G	EUF08240	e5wveG5	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
G	NB-ARC_1st	e5wveG6	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
I	ANAPC4_WD40_10	e5wveI7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
I	ANAPC4_WD40_10	e5wveI8	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
I	KOG4658_like	e5wveI3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
I	NB-ARC_2nd	e5wveI5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
I	EUF08240	e5wveI6	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
I	NB-ARC_1st	e5wveI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
K	ANAPC4_WD40_10	e5wveK5	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
K	ANAPC4_WD40_10	e5wveK7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
K	KOG4658_like	e5wveK3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
K	NB-ARC_2nd	e5wveK6	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
K	EUF08240	e5wveK1	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
K	NB-ARC_1st	e5wveK4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
M	ANAPC4_WD40_10	e5wveM6	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
M	ANAPC4_WD40_10	e5wveM7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_10	ECOD (1.6)
M	KOG4658_like	e5wveM2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: KOG4658_like	ECOD (1.6)
M	NB-ARC_2nd	e5wveM1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: NB-ARC_2nd	ECOD (1.6)
M	EUF08240	e5wveM4	A: alpha superhelices	X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology)	T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain	F: EUF08240	ECOD (1.6)
M	NB-ARC_1st	e5wveM5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NB-ARC_1st	ECOD (1.6)
B	Cytochrom_C_1	e5wveB1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
D	Cytochrom_C_1	e5wveD1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
F	Cytochrom_C_1	e5wveF1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
H	Cytochrom_C_1	e5wveH1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
L	Cytochrom_C_1	e5wveL1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
N	Cytochrom_C_1	e5wveN1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
J	Cytochrom_C_1	e5wveJ1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C_1	ECOD (1.6)
O	CARD	e5wveO1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
P	CARD	e5wveP1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
Q	CARD	e5wveQ1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
R	CARD	e5wveR1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
W	CARD	e5wveW1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
X	CARD	e5wveX1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
S	CARD	e5wveS1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
T	CARD	e5wveT1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
U	CARD	e5wveU1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
V	CARD	e5wveV1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)
Y	CARD	e5wveY1	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: CARD	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M	PF00931	NB-ARC domain (NB-ARC)	NB-ARC domain	-	Domain
A, C, E, G, I A, C, E, G, I, K, M	PF17908	APAF-1 helical domain (APAF1_C)	APAF-1 helical domain	This domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein.	Domain
A, C, E, G, I A, C, E, G, I, K, M	PF21296	Apoptotic protease-activating factor 1-like, winged-helix domain (APAF-1-like_WHD)	Apoptotic protease-activating factor 1-like, winged-helix domain	This domain is found in Apoptotic protease-activating factor 1 from Mus musculus (APAF-1), responsible to ignite the downstream cascade of caspases in the mitochondrial pathway of apoptosis. This entry represents the winged-helix domain (WHD) [1-5].	Domain
A, C, E, G, I A, C, E, G, I, K, M	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
B, D, F, H, J B, D, F, H, J, L, N	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain
O, P, Q, R, W O, P, Q, R, W, X	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain
S, T, U, V, Y	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M	Apoptotic protease-activating factor 1	protein binding binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding protein binding binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity cysteine-type endopeptidase activator activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity peptidase activator activity involved in apoptotic process identical protein binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication cellular process apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of cysteine-type endopeptidase activity involved in apoptotic process organic substance metabolic process regulation of proteolysis proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process protein metabolic process activation of cysteine-type endopeptidase activity involved in apoptotic process activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c regulation of cysteine-type endopeptidase activity organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis metabolic process macromolecule metabolic process regulation of metabolic process multicellular organismal process embryonic epithelial tube formation chordate embryonic development tube formation embryo development multicellular organism development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching anatomical structure development epithelial tube morphogenesis system development developmental process morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development tissue development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure catabolic process macromolecule catabolic process regulation of DNA catabolic process nucleobase-containing compound metabolic process cellular component organization execution phase of apoptosis DNA catabolic process apoptotic nuclear changes cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of apoptotic DNA fragmentation cellular component disassembly DNA metabolic process regulation of catabolic process organic cyclic compound catabolic process nucleic acid metabolic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process apoptotic DNA fragmentation cellular component disassembly involved in execution phase of apoptosis nucleic acid catabolic process organic substance catabolic process regulation of DNA metabolic process response to G1 DNA damage checkpoint signaling response to endogenous stimulus response to mitotic cell cycle checkpoint signaling response to biotic stimulus cellular response to biotic stimulus cellular response to endogenous stimulus response to DNA integrity checkpoint signaling response to DNA damage checkpoint signaling response to cell cycle checkpoint signaling response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus animal organ development kidney development renal system development muscle cell apoptotic process striated muscle cell apoptotic process cardiac muscle cell apoptotic process cellular developmental process cell differentiation intracellular signal transduction intrinsic apoptotic signaling pathway cellular response to growth factor stimulus response to transforming growth factor beta cellular response to transforming growth factor beta stimulus response to growth factor head development forebrain development brain development central nervous system development neuron apoptotic process intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress cellular response to stress response to endoplasmic reticulum stress response to nutrient levels response to chemical response to nutrient	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle protein-containing complex apoptosome vesicle lumen cytoplasmic vesicle lumen secretory granule lumen nucleus
B, D, F, H, J B, D, F, H, J, L, N	Cytochrome c	binding lipid binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	aerobic respiration cellular respiration aerobic electron transport chain oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy mitochondrial electron transport, cytochrome c to oxygen respiratory electron transport chain metabolic process cellular process mitochondrial ATP synthesis coupled electron transport aerobic respiration cellular respiration aerobic electron transport chain oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy mitochondrial electron transport, cytochrome c to oxygen respiratory electron transport chain metabolic process cellular process mitochondrial ATP synthesis coupled electron transport mitochondrial electron transport, ubiquinol to cytochrome c regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of biological process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process organic substance metabolic process regulation of proteolysis proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process protein metabolic process regulation of cysteine-type endopeptidase activity regulation of biological process organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity biological regulation positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis macromolecule metabolic process regulation of metabolic process apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process cytochrome complex assembly protein-tetrapyrrole linkage protein-containing complex organization cytochrome c-heme linkage cellular component organization cellular component biogenesis cellular component assembly macromolecule modification protein-heme linkage protein-containing complex assembly cellular component organization or biogenesis protein modification process positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of cysteine-type endopeptidase activity involved in apoptotic process	membrane respirasome cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle mitochondrial intermembrane space mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle envelope lumen intracellular organelle membrane respirasome cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle mitochondrial intermembrane space mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle envelope lumen intracellular organelle organelle envelope organelle lumen organelle mitochondrial envelope protein-containing complex cytochrome complex catalytic complex
O, P, Q, R, W O, P, Q, R, W, X	Apoptotic protease-activating factor 1	protein binding binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding protein binding binding heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity cysteine-type endopeptidase activator activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity peptidase activator activity involved in apoptotic process identical protein binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication cellular process apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of cysteine-type endopeptidase activity involved in apoptotic process organic substance metabolic process regulation of proteolysis proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process protein metabolic process activation of cysteine-type endopeptidase activity involved in apoptotic process activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c regulation of cysteine-type endopeptidase activity organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis metabolic process macromolecule metabolic process regulation of metabolic process multicellular organismal process embryonic epithelial tube formation chordate embryonic development tube formation embryo development multicellular organism development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching anatomical structure development epithelial tube morphogenesis system development developmental process morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development tissue development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure catabolic process macromolecule catabolic process regulation of DNA catabolic process nucleobase-containing compound metabolic process cellular component organization execution phase of apoptosis DNA catabolic process apoptotic nuclear changes cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of apoptotic DNA fragmentation cellular component disassembly DNA metabolic process regulation of catabolic process organic cyclic compound catabolic process nucleic acid metabolic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process apoptotic DNA fragmentation cellular component disassembly involved in execution phase of apoptosis nucleic acid catabolic process organic substance catabolic process regulation of DNA metabolic process response to G1 DNA damage checkpoint signaling response to endogenous stimulus response to mitotic cell cycle checkpoint signaling response to biotic stimulus cellular response to biotic stimulus cellular response to endogenous stimulus response to DNA integrity checkpoint signaling response to DNA damage checkpoint signaling response to cell cycle checkpoint signaling response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus animal organ development kidney development renal system development muscle cell apoptotic process striated muscle cell apoptotic process cardiac muscle cell apoptotic process cellular developmental process cell differentiation intracellular signal transduction intrinsic apoptotic signaling pathway cellular response to growth factor stimulus response to transforming growth factor beta cellular response to transforming growth factor beta stimulus response to growth factor head development forebrain development brain development central nervous system development neuron apoptotic process intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress cellular response to stress response to endoplasmic reticulum stress response to nutrient levels response to chemical response to nutrient	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle protein-containing complex apoptosome vesicle lumen cytoplasmic vesicle lumen secretory granule lumen nucleus
S, T, U, V, Y	Caspase	SH3 domain binding protein binding binding protein domain specific binding identical protein binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity enzyme regulator activity enzyme activator activity SH3 domain binding protein binding binding protein domain specific binding identical protein binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity kinase binding enzyme binding protein kinase binding cysteine-type endopeptidase activity involved in apoptotic process cysteine-type endopeptidase activity involved in apoptotic signaling pathway	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process leukocyte apoptotic process apoptotic process cell death programmed cell death response to ischemia glial cell apoptotic process regulation of biological process positive regulation of programmed cell death cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process leukocyte apoptotic process apoptotic process cell death programmed cell death response to ischemia glial cell apoptotic process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of cysteine-type endopeptidase activity involved in apoptotic process organic substance metabolic process regulation of proteolysis proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process protein metabolic process activation of cysteine-type endopeptidase activity involved in apoptotic process activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c regulation of cysteine-type endopeptidase activity organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis metabolic process macromolecule metabolic process regulation of metabolic process response to organic substance response to ketone response to lipid cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to organic substance cellular response to ketone cellular response to steroid hormone stimulus response to organic cyclic compound cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to organic cyclic compound cellular response to glucocorticoid stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to chemical stimulus response to chemical cellular response to lipid response to dexamethasone fibroblast apoptotic process response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development kidney development renal system development system development signaling intracellular signal transduction cell communication signal transduction in response to DNA damage signal transduction apoptotic signaling pathway intrinsic apoptotic signaling pathway epithelial cell apoptotic process cellular biosynthetic process cellular metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process organic substance biosynthetic process protein processing intrinsic apoptotic signaling pathway in response to DNA damage cellular developmental process hemopoiesis platelet morphogenesis cell development cell morphogenesis anatomical structure morphogenesis myeloid cell differentiation cell differentiation platelet formation anatomical structure formation involved in morphogenesis response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation cellular response to abiotic stimulus cellular response to UV response to cobalt ion response to metal ion response to inorganic substance biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin response to estradiol	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex apoptosome nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M	IPR019775	WD40 repeat, conserved site	Conserved Site
A, C, E, G, I A, C, E, G, I, K, M	IPR037963	Apoptotic Protease-Activating Factor 1, CARD domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR002182	NB-ARC	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR048975	Apoptotic protease-activating factor 1, winged-helix domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR020472	G-protein beta WD-40 repeat	Repeat
A, C, E, G, I A, C, E, G, I, K, M	IPR017251	Apoptotic protease-activating factor 1	Family
A, C, E, G, I A, C, E, G, I, K, M	IPR041452	APAF-1 helical domain	Domain
A, C, E, G, I A, C, E, G, I, K, M	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M	IPR001680	WD40 repeat	Repeat
A, C, E, G, I A, C, E, G, I, K, M	IPR001315	CARD domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR009056	Cytochrome c-like domain	Domain
B, D, F, H, J B, D, F, H, J, L, N	IPR002327	Cytochrome c, class IA/ IB	Family
O, P, Q, R, W O, P, Q, R, W, X	IPR019775	WD40 repeat, conserved site	Conserved Site
O, P, Q, R, W O, P, Q, R, W, X	IPR037963	Apoptotic Protease-Activating Factor 1, CARD domain	Domain
O, P, Q, R, W O, P, Q, R, W, X	IPR002182	NB-ARC	Domain
O, P, Q, R, W O, P, Q, R, W, X	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR048975	Apoptotic protease-activating factor 1, winged-helix domain	Domain
O, P, Q, R, W O, P, Q, R, W, X	IPR020472	G-protein beta WD-40 repeat	Repeat
O, P, Q, R, W O, P, Q, R, W, X	IPR017251	Apoptotic protease-activating factor 1	Family
O, P, Q, R, W O, P, Q, R, W, X	IPR041452	APAF-1 helical domain	Domain
O, P, Q, R, W O, P, Q, R, W, X	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR011029	Death-like domain superfamily	Homologous Superfamily
O, P, Q, R, W O, P, Q, R, W, X	IPR001680	WD40 repeat	Repeat
O, P, Q, R, W O, P, Q, R, W, X	IPR001315	CARD domain	Domain
S, T, U, V, Y	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
S, T, U, V, Y	IPR001309	Peptidase C14, p20 domain	Domain
S, T, U, V, Y	IPR011600	Peptidase C14, caspase domain	Domain
S, T, U, V, Y	IPR016129	Peptidase family C14A, His active site	Active Site
S, T, U, V, Y	IPR042147	CASP9, CARD domain	Domain
S, T, U, V, Y	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
S, T, U, V, Y	IPR011029	Death-like domain superfamily	Homologous Superfamily
S, T, U, V, Y	IPR033139	Peptidase family C14A, cysteine active site	Active Site
S, T, U, V, Y	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
S, T, U, V, Y	IPR001315	CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G, I A, C, E, G, I, K, M	Pharos: O14727	transitional cell carcinoma renal cell carcinoma retinal detachment Skin Abnormalities collecting duct carcinoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma papillary renal cell carcinoma adrenal cortex carcinoma clear cell renal carcinoma hepatocellular carcinoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous neoplasm renal carcinoma cancer transitional cell carcinoma renal cell carcinoma retinal detachment Skin Abnormalities collecting duct carcinoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma papillary renal cell carcinoma adrenal cortex carcinoma clear cell renal carcinoma hepatocellular carcinoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous neoplasm renal carcinoma cancer exocrine pancreatic carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia major depressive disorder osteosarcoma
O, P, Q, R, W O, P, Q, R, W, X	Pharos: O14727	transitional cell carcinoma renal cell carcinoma retinal detachment Skin Abnormalities collecting duct carcinoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma papillary renal cell carcinoma adrenal cortex carcinoma clear cell renal carcinoma hepatocellular carcinoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous neoplasm renal carcinoma cancer transitional cell carcinoma renal cell carcinoma retinal detachment Skin Abnormalities collecting duct carcinoma sarcomatoid renal cell carcinoma chromophobe renal cell carcinoma papillary renal cell carcinoma adrenal cortex carcinoma clear cell renal carcinoma hepatocellular carcinoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous neoplasm renal carcinoma cancer exocrine pancreatic carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia major depressive disorder osteosarcoma
S, T, U, V, Y	Pharos: P55211	retinal detachment transient ischemic attack brain ischemia peripheral nervous system disease prostate cancer Edema peripheral neuropathy nervous system disorder tuberculosis adrenal cortex carcinoma cancer intestinal disease lymphatic system disease alcoholic pancreatitis liver disease retinal detachment transient ischemic attack brain ischemia peripheral nervous system disease prostate cancer Edema peripheral neuropathy nervous system disorder tuberculosis adrenal cortex carcinoma cancer intestinal disease lymphatic system disease alcoholic pancreatitis liver disease breast disease hematologic disease lung disease