5VCA

VCP like ATPase from T. acidophilum (VAT)-Substrate bound conformation

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth P]	CDC48	e5vcaP4	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
A [auth P]	Vps4_C_C_1	e5vcaP1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
A [auth P]	Sigma54_activat	e5vcaP2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
B [auth M]	CDC48	e5vcaM3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
B [auth M]	Vps4_C_C_1	e5vcaM4	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
B [auth M]	Sigma54_activat	e5vcaM1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
C [auth N]	CDC48	e5vcaN2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
C [auth N]	Vps4_C_C_1	e5vcaN1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
C [auth N]	Sigma54_activat	e5vcaN4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
D [auth O]	CDC48	e5vcaO4	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
D [auth O]	Vps4_C_C_1	e5vcaO1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
D [auth O]	Sigma54_activat	e5vcaO3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
E [auth Q]	CDC48	e5vcaQ2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
E [auth Q]	Vps4_C_C_1	e5vcaQ3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
E [auth Q]	Sigma54_activat	e5vcaQ4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
F [auth R]	CDC48	e5vcaR3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
F [auth R]	Vps4_C_C_1	e5vcaR2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: Vps4_C_C_1	ECOD (1.6)
F [auth R]	Sigma54_activat	e5vcaR1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	VCP-like ATPase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	primary metabolic process metabolic process organic substance metabolic process macromolecule metabolic process response to stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR029067	CDC48 domain 2-like superfamily	Homologous Superfamily
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR004201	CDC48, domain 2	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR005938	AAA ATPase, CDC48 family	Family
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR003338	CDC48, N-terminal subdomain	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR003593	AAA+ ATPase domain	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR003959	ATPase, AAA-type, core	Domain
A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], A [auth P], B [auth M], C [auth N], D [auth O], E [auth Q], F [auth R]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.