5MC6

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth J]SCOP2B SuperfamilyRibosomal protein S108098648 3001336 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain8059235 3000034 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8063424 3000135 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052569 3000068 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
R [auth Q]SCOP2B SuperfamilyRibosomal S3Ae-like8053211 3002166 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
W [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
Z [auth Y]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
Z [auth Y]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
AA [auth Z]SCOP2B SuperfamilyTranslational machinery components8095805 3000571 SCOP2B (2022-06-29)
BA [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
CA [auth b]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRibosomal protein S78065993 3000799 SCOP2B (2022-06-29)
FA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8093614 3000068 SCOP2B (2022-06-29)
HA [auth g]SCOP2B SuperfamilyRibosomal protein S30e-like8053451 3002190 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
NA [auth j]SCOP2B SuperfamilyWD40 repeat-like8039680 3001694 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyWD40 repeat-like8039680 3001694 SCOP2B (2022-06-29)
PA [auth AA]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
QA [auth AB]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
RA [auth AC]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
UA [auth AF]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
VA [auth AG]SCOP2B SuperfamilyRL5-like8073884 3001709 SCOP2B (2022-06-29)
WA [auth AH]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
XA [auth AI]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyL30e-like8096946 3001739 SCOP2B (2022-06-29)
YA [auth AJ]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
ZA [auth AK]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
AB [auth AL]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
CB [auth AN]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
FB [auth AQ]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
GB [auth AR]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyRibosomal protein S198086076 3000686 SCOP2B (2022-06-29)
IB [auth AT]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
JB [auth AU]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
KB [auth AV]SCOP2B SuperfamilyRibosomal protein L29e8053045 3002157 SCOP2B (2022-06-29)
MB [auth AX]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
NB [auth AY]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
PB [auth BA]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
QB [auth BB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
SB [auth BD]SCOP2B SuperfamilyRibosomal protein L16p/L10e8079407 3000884 SCOP2B (2022-06-29)
TB [auth BE]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
TB [auth BE]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
UB [auth BF]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
XB [auth BI]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)
ZB [auth BK]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
AC [auth BL]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
BC [auth BM]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
CC [auth BN]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
DC [auth BO]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
DC [auth BO]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth I]PF01090e5mc6I1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
K [auth J]PF00338e5mc6J1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
L [auth K]PF03297e5mc6K1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
M [auth L]PF01200e5mc6L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
N [auth M]PF00253e5mc6M1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
O [auth N]PF01599e5mc6N1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
P [auth O]PF00400e5mc6O1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Q [auth P]PF00318e5mc6P1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
R [auth Q]PF01015e5mc6Q1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
R [auth Q]PF01015e5mc6Q2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
S [auth R]PF03719e5mc6R3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
S [auth R]PF00333e5mc6R1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
S [auth R]PF00333e5mc6R2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
B [auth A]PF00189e5mc6A1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
B [auth A]PF07650e5mc6A2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
T [auth S]PF00900e5mc6S3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
T [auth S]PF00467,PF16121e5mc6S2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
T [auth S]PF00900,PF01479,PF08071e5mc6S1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
U [auth T]PF01092e5mc6T1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
V [auth U]PF01251e5mc6U2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
W [auth V]PF01201e5mc6V1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
X [auth W]PF00163,PF01479e5mc6W1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
Y [auth X]PF00366,PF16205e5mc6X1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
Z [auth Y]PF08069e5mc6Y1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
Z [auth Y]PF00312e5mc6Y2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
AA [auth Z]PF00411e5mc6Z1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
BA [auth a]PF01249e5mc6a1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
CA [auth b]PF00410e5mc6b1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
CA [auth b]PF00410e5mc6b2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
C [auth B]PF00177e5mc6B1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
DA [auth c]PF00164e5mc6c1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
EA [auth d]PF01282e5mc6d1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
FA [auth e]PF01283e5mc6e1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
GA [auth f]PF01667e5mc6f1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
HA [auth g]PF04758e5mc6g1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
LA [auth h]PF21409e5mc6h5 A: beta barrelsX: SH3H: SH3T: SH3F: PF21409ECOD (1.6)
LA [auth h]F_UNCLASSIFIEDe5mc6h7 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
LA [auth h]PF21408e5mc6h6 A: alpha arraysX: HTHH: HTHT: wingedF: PF21408ECOD (1.6)
LA [auth h]PF08148e5mc6h4 A: alpha arraysX: Sec63 N-terminal subdomain-like (From Topology)H: Sec63 N-terminal subdomain-like (From Topology)T: Sec63 N-terminal subdomain-likeF: PF08148ECOD (1.6)
LA [auth h]PF00270e5mc6h2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
LA [auth h]PF00271e5mc6h1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
LA [auth h]PF17911e5mc6h3 A: extended segmentsX: Antiviral helicase Ski2 N-terminal extended region (From Topology)H: Antiviral helicase Ski2 N-terminal extended region (From Topology)T: Antiviral helicase Ski2 N-terminal extended regionF: PF17911ECOD (1.6)
MA [auth i]PF18833e5mc6i1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF18833ECOD (1.6)
D [auth C]PF03501e5mc6C1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
NA [auth j]PF00400e5mc6j1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
OA [auth k]PF00400e5mc6k1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
PA [auth AA]PF01248e5mc6AA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QA [auth AB]PF00238e5mc6AB1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
RA [auth AC]PF01158e5mc6AC1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
SA [auth AD]PF00347e5mc6AD2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
TA [auth AE]PF01246e5mc6AE1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
UA [auth AF]PF01907e5mc6AF1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
VA [auth AG]PF00281,PF00673e5mc6AG1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
WA [auth AH]PF00276,PF03939e5mc6AH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
XA [auth AI]PF01781e5mc6AI1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
E [auth D]PF01248e5mc6D1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
YA [auth AJ]PF01294e5mc6AJ1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
ZA [auth AK]PF16906e5mc6AK1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
AB [auth AL]PF00832e5mc6AL1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
BB [auth AM]PF00467,PF01929e5mc6AM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
CB [auth AN]PF01777e5mc6AN1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
DB [auth AO]PF01020e5mc6AO1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
EB [auth AP]PF00935e5mc6AP1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
FB [auth AQ]PF00827e5mc6AQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
GB [auth AR]PF00828e5mc6AR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
HB [auth AS]PF05162e5mc6AS1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
F [auth E]PF00203e5mc6E1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
IB [auth AT]PF01780e5mc6AT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
JB [auth AU]PF00572e5mc6AU1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
KB [auth AV]PF01779e5mc6AV1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
LB [auth AW]PF00181e5mc6AW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
LB [auth AW]PF03947e5mc6AW2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
MB [auth AX]PF00237e5mc6AX1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
NB [auth AY]PF01248e5mc6AY1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
PB [auth BA]PF00297e5mc6BA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
QB [auth BB]PF17135e5mc6BB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
RB [auth BC]PF01198e5mc6BC1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
G [auth F]PF00380e5mc6F1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
SB [auth BD]PF00252e5mc6BD1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
TB [auth BE]PF00573e5mc6BE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
TB [auth BE]PF14374e5mc6BE2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
UB [auth BF]PF01280e5mc6BF2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
UB [auth BF]PF01280e5mc6BF1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
VB [auth BG]PF01655e5mc6BG1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
WB [auth BH]F_UNCLASSIFIEDe5mc6BH1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
WB [auth BH]PF01775e5mc6BH2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
XB [auth BI]PF14204,PF17144e5mc6BI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
YB [auth BJ]PF01157e5mc6BJ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
ZB [auth BK]PF01247e5mc6BK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
AC [auth BL]PF01776e5mc6BL1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
BC [auth BM]PF01159e5mc6BM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
H [auth G]PF00833e5mc6G1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
CC [auth BN]PF01199e5mc6BN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
DC [auth BO]PF00327,PF08079e5mc6BO1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
EC [auth BP]PF00831e5mc6BP1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
IC [auth BT]PF01287e5mc6BT1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01287ECOD (1.6)
IC [auth BT]PF21485e5mc6BT2 A: beta barrelsX: SH3H: SH3T: SH3F: PF21485ECOD (1.6)
I [auth H]PF00416e5mc6H1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth I]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
K [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
L [auth K]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
M [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
N [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth N]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
P [auth O]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth P]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
R [auth Q]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
S [auth R]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
S [auth R]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
B [auth A]PF07650KH domain (KH_2)KH domain- Domain
B [auth A]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
T [auth S]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
T [auth S]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
T [auth S]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
T [auth S]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
T [auth S]PF00467KOW motif (KOW)KOW motif- Family
U [auth T]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
V [auth U]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
W [auth V]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
X [auth W]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
X [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
Y [auth X]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
Y [auth X]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
Z [auth Y]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
Z [auth Y]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
AA [auth Z]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
BA [auth a]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
CA [auth b]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
C [auth B]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
DA [auth c]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
EA [auth d]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
FA [auth e]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
GA [auth f]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
HA [auth g]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
LA [auth h]PF08148DSHCT (NUC185) domain (DSHCT)DSHCT (NUC185) domainThis C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [1].Domain
LA [auth h]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
LA [auth h]PF21409Ski2, beta-barrel domain (Ski2_beta-barrel)Ski2, beta-barrel domainSki2 from yeast is an helicase with an overall similar structure to MTR4 proteins. It has an arch domain with an helical stalk/elbow (Pfam:PF21408) that flanks a beta-barrel (referred to as the KOW module in MTR4 homologues). This entry represents th ...Ski2 from yeast is an helicase with an overall similar structure to MTR4 proteins. It has an arch domain with an helical stalk/elbow (Pfam:PF21408) that flanks a beta-barrel (referred to as the KOW module in MTR4 homologues). This entry represents the beta-barrel of Ski2 which does not have the KOW motif and is tightly packed against the helical stalk [1,2].
Domain
LA [auth h]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
LA [auth h]PF21408Exosome RNA helicase MTR4-like, stalk (MTR4-like_stalk)Exosome RNA helicase MTR4-like, stalkExosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involv ...Exosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involving the so-called TRAMP complex [1,2]. It contains an arch domain, required for proper 5.8S rRNA processing, and appears to function independently of canonical helicase activity [3]. The arch domain comprises an helical stalk/elbow that flanks a KOW module which adopts a beta-barrel fold. This entry represents the helical stalk found at the N-terminal of KOW beta-barrel from MTR4 [1-3]. This entry also includes Ski2-like helicases which have an overall similar structure to MTR4 proteins. However, Ski2 from yeast does not have the KOW motif and the beta-barrel is tightly packed against the helical stalk [3].
Domain
MA [auth i]PF18833Tetratricopeptide repeat (TPR_22)Tetratricopeptide repeat- Repeat
D [auth C]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
NA [auth j],
OA [auth k]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PA [auth AA]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
QA [auth AB]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
RA [auth AC]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
SA [auth AD]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
TA [auth AE]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
UA [auth AF]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
VA [auth AG]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
VA [auth AG]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
WA [auth AH]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
WA [auth AH]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
XA [auth AI]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
E [auth D]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
YA [auth AJ]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
ZA [auth AK]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
ZA [auth AK]PF00467KOW motif (KOW)KOW motif- Family
AB [auth AL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
BB [auth AM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
BB [auth AM]PF00467KOW motif (KOW)KOW motif- Family
CB [auth AN]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
DB [auth AO]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
EB [auth AP]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
FB [auth AQ]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
GB [auth AR]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
HB [auth AS]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
F [auth E]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
IB [auth AT]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
JB [auth AU]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
KB [auth AV]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
LB [auth AW]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
LB [auth AW]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
MB [auth AX]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
NB [auth AY]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PB [auth BA]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
QB [auth BB]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
RB [auth BC]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
G [auth F]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
SB [auth BD]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
TB [auth BE]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
TB [auth BE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
UB [auth BF]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
VB [auth BG]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
WB [auth BH]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
XB [auth BI]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
XB [auth BI]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
YB [auth BJ]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
ZB [auth BK]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
AC [auth BL]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
BC [auth BM]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
H [auth G]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
CC [auth BN]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
DC [auth BO]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
DC [auth BO]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
EC [auth BP]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
IC [auth BT]PF21485Translation initiation factor 5A-like, N-terminal (IF5A-like_N)Translation initiation factor 5A-like, N-terminalThis is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ...This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation between consecutive proline residues [1-5]. This entry also includes Woronin body major protein Hex1, which is similar to eIF5A.
Domain
IC [auth BT]PF01287Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a)Eukaryotic elongation factor 5A hypusine, DNA-binding OB foldeIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1].Domain
I [auth H]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S ribosomal RNA---
J [auth I]40S ribosomal protein S19-A
K [auth J]40S ribosomal protein S20
L [auth K]40S ribosomal protein S25-A
M [auth L]40S ribosomal protein S28-B
N [auth M]40S ribosomal protein S29-A
O [auth N]Ubiquitin-40S ribosomal protein S31
P [auth O]Guanine nucleotide-binding protein subunit beta-like protein
Q [auth P]40S ribosomal protein S0-A
R [auth Q]40S ribosomal protein S1-A
S [auth R]40S ribosomal protein S2
B [auth A]40S ribosomal protein S3
T [auth S]40S ribosomal protein S4-A
U [auth T]40S ribosomal protein S6-A
V [auth U]40S ribosomal protein S7-A
W [auth V]40S ribosomal protein S8-A
X [auth W]40S ribosomal protein S9-A
Y [auth X]40S ribosomal protein S11-A
Z [auth Y]40S ribosomal protein S13
AA [auth Z]40S ribosomal protein S14-A
BA [auth a]40S ribosomal protein S21-A
CA [auth b]40S ribosomal protein S22-A
C [auth B]40S ribosomal protein S5
DA [auth c]40S ribosomal protein S23-A
EA [auth d]40S ribosomal protein S24-A
FA [auth e]40S ribosomal protein S26-A
GA [auth f]40S ribosomal protein S27-A
HA [auth g]40S ribosomal protein S30-A
IA [auth l]mRNA---
JA [auth m]A-site tRNA---
KA [auth n]P-site tRNA---
LA [auth h]Antiviral helicase SKI2
MA [auth i]Superkiller protein 3-
D [auth C]40S ribosomal protein S10-A
NA [auth j],
OA [auth k]
Antiviral protein SKI8-
PA [auth AA]60S ribosomal protein L8-A
QA [auth AB]60S ribosomal protein L23-A
RA [auth AC]60S ribosomal protein L36-A
SA [auth AD]60S ribosomal protein L9-A
TA [auth AE]60S ribosomal protein L24-A
UA [auth AF]60S ribosomal protein L37-A
VA [auth AG]60S ribosomal protein L11-A
WA [auth AH]60S ribosomal protein L25
XA [auth AI]60S ribosomal protein L38
E [auth D]40S ribosomal protein S12
YA [auth AJ]60S ribosomal protein L13-A
ZA [auth AK]60S ribosomal protein L26-A
AB [auth AL]60S ribosomal protein L39
BB [auth AM]60S ribosomal protein L14-A
CB [auth AN]60S ribosomal protein L27-A
DB [auth AO]Ubiquitin-60S ribosomal protein L40
EB [auth AP]60S ribosomal protein L42-A
FB [auth AQ]60S ribosomal protein L15-A
GB [auth AR]60S ribosomal protein L28
HB [auth AS]60S ribosomal protein L41-A
F [auth E]40S ribosomal protein S15
IB [auth AT]60S ribosomal protein L43-A
JB [auth AU]60S ribosomal protein L16-A
KB [auth AV]60S ribosomal protein L29
LB [auth AW]60S ribosomal protein L2-A
MB [auth AX]60S ribosomal protein L17-A
NB [auth AY]60S ribosomal protein L30
OB [auth AZ]uL1---
PB [auth BA]60S ribosomal protein L3
QB [auth BB]60S ribosomal protein L18-A
RB [auth BC]60S ribosomal protein L31-A
G [auth F]40S ribosomal protein S16-A
SB [auth BD]60S ribosomal protein L10
TB [auth BE]60S ribosomal protein L4-A
UB [auth BF]60S ribosomal protein L19-A
VB [auth BG]60S ribosomal protein L32
WB [auth BH]60S ribosomal protein L20-A
XB [auth BI]60S ribosomal protein L5
YB [auth BJ]60S ribosomal protein L21-A
ZB [auth BK]60S ribosomal protein L33-A
AC [auth BL]60S ribosomal protein L22-A
BC [auth BM]60S ribosomal protein L6-A
H [auth G]40S ribosomal protein S17-B
CC [auth BN]60S ribosomal protein L34-A
DC [auth BO]60S ribosomal protein L7-A
EC [auth BP]60S ribosomal protein L35-A
FC [auth BQ]25S ribosomal RNA---
GC [auth BR]5S ribosomal RNA---
HC [auth BS]5.8S ribosomal RNA---
IC [auth BT]Eukaryotic translation initiation factor 5A-1
I [auth H]40S ribosomal protein S18-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth I]IPR001266Small ribosomal subunit protein eS19Family
J [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
J [auth I]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
J [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
K [auth J]IPR001848Small ribosomal subunit protein uS10Family
K [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
K [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
K [auth J]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
K [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
L [auth K]IPR004977Small ribosomal subunit protein eS25Family
L [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
M [auth L]IPR028626Ribosomal protein eS28 conserved siteConserved Site
M [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth L]IPR000289Small ribosomal subunit protein eS28Family
N [auth M]IPR001209Small ribosomal subunit protein uS14Family
N [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth M]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
N [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth N]IPR019954Ubiquitin conserved siteConserved Site
O [auth N]IPR000626Ubiquitin-like domainDomain
O [auth N]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
O [auth N]IPR002906Small ribosomal subunit protein eS31Domain
O [auth N]IPR019956Ubiquitin domainDomain
O [auth N]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
O [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
P [auth O]IPR019775WD40 repeat, conserved siteConserved Site
P [auth O]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth O]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth O]IPR045223Small ribosomal subunit protein RACK1-likeFamily
P [auth O]IPR001680WD40 repeatRepeat
P [auth O]IPR020472G-protein beta WD-40 repeatRepeat
Q [auth P]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
Q [auth P]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
Q [auth P]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
Q [auth P]IPR001865Small ribosomal subunit protein uS2Family
Q [auth P]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
R [auth Q]IPR001593Small ribosomal subunit protein eS1Family
R [auth Q]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
R [auth Q]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
S [auth R]IPR000851Small ribosomal subunit protein uS5Family
S [auth R]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
S [auth R]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
S [auth R]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
S [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
S [auth R]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
S [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
B [auth A]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth A]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth A]IPR004044K Homology domain, type 2Domain
B [auth A]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth A]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth A]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
B [auth A]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
T [auth S]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
T [auth S]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
T [auth S]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
T [auth S]IPR002942RNA-binding S4 domainDomain
T [auth S]IPR013845Small ribosomal subunit protein eS4, central regionDomain
T [auth S]IPR000876Small ribosomal subunit protein eS4Family
T [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth S]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
T [auth S]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
T [auth S]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
T [auth S]IPR005824KOWDomain
U [auth T]IPR014401Small ribosomal subunit protein eS6-likeFamily
U [auth T]IPR001377Small ribosomal subunit protein eS6Family
U [auth T]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
V [auth U]IPR000554Small ribosomal subunit protein eS7Family
V [auth U]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
W [auth V]IPR001047Small ribosomal subunit protein eS8Family
W [auth V]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
W [auth V]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
W [auth V]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
X [auth W]IPR002942RNA-binding S4 domainDomain
X [auth W]IPR022801Small ribosomal subunit protein uS4Family
X [auth W]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
X [auth W]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
X [auth W]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
X [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
Y [auth X]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Y [auth X]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
Y [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth X]IPR000266Small ribosomal subunit protein uS17Family
Y [auth X]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
Z [auth Y]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
Z [auth Y]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Z [auth Y]IPR000589Small ribosomal subunit protein uS15Family
Z [auth Y]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
AA [auth Z]IPR001971Small ribosomal subunit protein uS11Family
AA [auth Z]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
AA [auth Z]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
BA [auth a]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
BA [auth a]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
BA [auth a]IPR001931Small ribosomal subunit protein eS21Family
CA [auth b]IPR000630Small ribosomal subunit protein uS8Family
CA [auth b]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CA [auth b]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
C [auth B]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
C [auth B]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
C [auth B]IPR000235Small ribosomal subunit protein uS7Family
C [auth B]IPR023798Small ribosomal subunit protein uS7 domainDomain
C [auth B]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
DA [auth c]IPR006032Small ribosomal subunit protein uS12Family
DA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
EA [auth d]IPR001976Small ribosomal subunit protein eS24Family
EA [auth d]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth d]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
FA [auth e]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
FA [auth e]IPR000892Small ribosomal subunit protein eS26Family
FA [auth e]IPR047864Ribosomal protein eS26, conserved siteConserved Site
GA [auth f]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
GA [auth f]IPR000592Small ribosomal subunit protein eS27Family
GA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth g]IPR006846Small ribosomal subunit protein eS30Family
LA [auth h]IPR048392Exosome RNA helicase MTR4-like, stalkDomain
LA [auth h]IPR048727Ski2, beta-barrel domainDomain
LA [auth h]IPR012961ATP-dependent RNA helicase Ski2/MTR4, C-terminalDomain
LA [auth h]IPR001650Helicase, C-terminal domain-likeDomain
LA [auth h]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
LA [auth h]IPR040801Ski2, N-terminal domainDomain
LA [auth h]IPR016438ATP-dependent RNA helicase SKI2-likeFamily
LA [auth h]IPR011545DEAD/DEAH box helicase domainDomain
LA [auth h]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
MA [auth i]IPR040962Tetratricopeptide-like repeatRepeat
MA [auth i]IPR039226Ski3/TTC37Family
MA [auth i]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth i]IPR019734Tetratricopeptide repeatRepeat
D [auth C]IPR037447Small ribosomal subunit protein eS10Family
D [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
D [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
D [auth C]IPR005326Plectin/eS10, N-terminalDomain
NA [auth j],
OA [auth k]
IPR019775WD40 repeat, conserved siteConserved Site
NA [auth j],
OA [auth k]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
NA [auth j],
OA [auth k]
IPR001680WD40 repeatRepeat
NA [auth j],
OA [auth k]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
PA [auth AA]IPR001921Large ribosomal subunit protein eL8Family
PA [auth AA]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
PA [auth AA]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
PA [auth AA]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
PA [auth AA]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
QA [auth AB]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
QA [auth AB]IPR000218Large ribosomal subunit protein uL14Family
QA [auth AB]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
RA [auth AC]IPR000509Large ribosomal subunit protein eL36Family
RA [auth AC]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
SA [auth AD]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
SA [auth AD]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
SA [auth AD]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
SA [auth AD]IPR000702Large ribosomal subunit protein uL6-likeFamily
TA [auth AE]IPR000988Large ribosomal subunit protein eL24-relatedFamily
TA [auth AE]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
TA [auth AE]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
UA [auth AF]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
UA [auth AF]IPR001569Large ribosomal subunit protein eL37Family
UA [auth AF]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
UA [auth AF]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth AG]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
VA [auth AG]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
VA [auth AG]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
VA [auth AG]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
VA [auth AG]IPR002132Large ribosomal subunit protein uL5Family
WA [auth AH]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
WA [auth AH]IPR013025Large ribosomal subunit protein uL23-likeFamily
WA [auth AH]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WA [auth AH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth AH]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
XA [auth AI]IPR002675Large ribosomal subunit protein eL38Family
XA [auth AI]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
E [auth D]IPR000530Small ribosomal subunit protein eS12Family
E [auth D]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
E [auth D]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
E [auth D]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
YA [auth AJ]IPR001380Large ribosomal subunit protein eL13Family
YA [auth AJ]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
ZA [auth AK]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
ZA [auth AK]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
ZA [auth AK]IPR005824KOWDomain
ZA [auth AK]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
ZA [auth AK]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
ZA [auth AK]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AB [auth AL]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
AB [auth AL]IPR000077Large ribosomal subunit protein eL39Family
AB [auth AL]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
BB [auth AM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BB [auth AM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BB [auth AM]IPR039660Large ribosomal subunit protein eL14Family
BB [auth AM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
BB [auth AM]IPR002784Large ribosomal subunit protein eL14 domainDomain
BB [auth AM]IPR005824KOWDomain
CB [auth AN]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
CB [auth AN]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
CB [auth AN]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CB [auth AN]IPR001141Large ribosomal subunit protein eL27Family
CB [auth AN]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
DB [auth AO]IPR019954Ubiquitin conserved siteConserved Site
DB [auth AO]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
DB [auth AO]IPR000626Ubiquitin-like domainDomain
DB [auth AO]IPR019956Ubiquitin domainDomain
DB [auth AO]IPR001975Large ribosomal subunit protein eL40 domainDomain
DB [auth AO]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
EB [auth AP]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EB [auth AP]IPR000552Large ribosomal subunit protein eL42Family
FB [auth AQ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FB [auth AQ]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
FB [auth AQ]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
FB [auth AQ]IPR000439Large ribosomal subunit protein eL15Family
GB [auth AR]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GB [auth AR]IPR030878Large ribosomal subunit protein uL15Family
GB [auth AR]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GB [auth AR]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HB [auth AS]IPR007836Large ribosomal subunit protein eS32Family
F [auth E]IPR002222Small ribosomal subunit protein uS19Family
F [auth E]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
F [auth E]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
F [auth E]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
IB [auth AT]IPR002674Large ribosomal subunit protein eL43Family
IB [auth AT]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IB [auth AT]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JB [auth AU]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
JB [auth AU]IPR005822Large ribosomal subunit protein uL13Family
JB [auth AU]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
JB [auth AU]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
KB [auth AV]IPR002673Large ribosomal subunit protein eL29Family
LB [auth AW]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
LB [auth AW]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LB [auth AW]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LB [auth AW]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
LB [auth AW]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LB [auth AW]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
LB [auth AW]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
LB [auth AW]IPR002171Large ribosomal subunit protein uL2Family
MB [auth AX]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MB [auth AX]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MB [auth AX]IPR001063Large ribosomal subunit protein uL22Family
MB [auth AX]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
NB [auth AY]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
NB [auth AY]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
NB [auth AY]IPR039109Large ribosomal subunit protein eL30-likeFamily
NB [auth AY]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
PB [auth BA]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
PB [auth BA]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
PB [auth BA]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
PB [auth BA]IPR000597Large ribosomal subunit protein uL3Family
PB [auth BA]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
QB [auth BB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
QB [auth BB]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
QB [auth BB]IPR000039Large ribosomal subunit protein eL18Family
QB [auth BB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
RB [auth BC]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
RB [auth BC]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
RB [auth BC]IPR000054Large ribosomal subunit protein eL31Family
G [auth F]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
G [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth F]IPR000754Small ribosomal subunit protein uS9Family
G [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
SB [auth BD]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
SB [auth BD]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
SB [auth BD]IPR016180Large ribosomal subunit protein uL16 domainDomain
SB [auth BD]IPR047873Large ribosomal subunit protein uL16Family
SB [auth BD]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
TB [auth BE]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
TB [auth BE]IPR002136Large ribosomal subunit protein uL4Family
TB [auth BE]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
TB [auth BE]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
TB [auth BE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
UB [auth BF]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
UB [auth BF]IPR039547Large ribosomal subunit protein eL19Family
UB [auth BF]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
UB [auth BF]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
UB [auth BF]IPR000196Large ribosomal subunit protein eL19 domainDomain
UB [auth BF]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
VB [auth BG]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
VB [auth BG]IPR001515Large ribosomal subunit protein eL32Family
VB [auth BG]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
WB [auth BH]IPR028877Large ribosomal subunit protein eL20Family
WB [auth BH]IPR023573Large ribosomal subunit protein eL20 domainDomain
WB [auth BH]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
XB [auth BI]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
XB [auth BI]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
YB [auth BJ]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
YB [auth BJ]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
YB [auth BJ]IPR001147Large ribosomal subunit protein eL21Family
YB [auth BJ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
ZB [auth BK]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
ZB [auth BK]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
ZB [auth BK]IPR001780Large ribosomal subunit protein eL33Family
ZB [auth BK]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
AC [auth BL]IPR002671Large ribosomal subunit protein eL22Family
AC [auth BL]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
BC [auth BM]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
BC [auth BM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BC [auth BM]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
BC [auth BM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BC [auth BM]IPR000915Large ribosomal subunit protein eL6Family
H [auth G]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
H [auth G]IPR001210Small ribosomal subunit protein eS17Family
H [auth G]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
CC [auth BN]IPR008195Large ribosomal subunit protein eL34Family
CC [auth BN]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
DC [auth BO]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
DC [auth BO]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DC [auth BO]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
DC [auth BO]IPR039699Large ribosomal subunit protein uL30Family
DC [auth BO]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
DC [auth BO]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DC [auth BO]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EC [auth BP]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
EC [auth BP]IPR001854Large ribosomal subunit protein uL29Family
EC [auth BP]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
EC [auth BP]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
IC [auth BT]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IC [auth BT]IPR020189Translation elongation factor, IF5A C-terminalDomain
IC [auth BT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IC [auth BT]IPR019769Translation elongation factor, IF5A, hypusine sitePTM
IC [auth BT]IPR001884Translation elongation factor IF5A-likeFamily
IC [auth BT]IPR048670Translation initiation factor 5A-like, N-terminalDomain
IC [auth BT]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth H]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
I [auth H]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
I [auth H]IPR001892Small ribosomal subunit protein uS13Family
I [auth H]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily