5M94

Crystal structure of Staphylococcus capitis divalent metal ion transporter (DMT) in complex with nanobody

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5m94b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5m94d_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01566e5m94A1 A: alpha complex topologyX: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)T: Sodium:neurotransmitter symporter family (SNF)-likeF: PF01566ECOD (1.6)
CPF01566e5m94C1 A: alpha complex topologyX: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)H: Sodium:neurotransmitter symporter family (SNF)-like (From Topology)T: Sodium:neurotransmitter symporter family (SNF)-likeF: PF01566ECOD (1.6)
BPF07686e5m94B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
DPF07686e5m94D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, D
nAb camelid VH Vicugna pacos (alpaca) IGHV3S53*01, IGHJ6*01 V-DOMAIN VH IG VH IMGT (202416-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, D
Heavy ChainIGHV1 -divalent metal cation transporter mnthSAbDab (2024-04-26)