5M3L
Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris hemoglobin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Globin-like | 8043787 | 3000554 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Globin-like | 8043787 | 3000554 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Globin-like | 8043787 | 3000554 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Globin-like | 8043788 | 3000554 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Globin-like | 8043788 | 3000554 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Globin-like | 8043788 | 3000554 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Globin-like | 8043789 | 3000554 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Globin-like | 8043789 | 3000554 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Globin-like | 8043789 | 3000554 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Globin-like | 8043790 | 3000554 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Globin-like | 8043790 | 3000554 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Globin-like | 8043790 | 3000554 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | LDL receptor-like module | 8042056 | 3000728 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Extracellular hemoglobin linker subunit receptor domain | 8042055 | 3000638 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Heterotrimerisation domain of extracellular hemoglobin linker subunits | 8042058 | 3000575 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Extracellular hemoglobin linker subunit receptor domain | 8042059 | 3000638 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | LDL receptor-like module | 8042061 | 3000728 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Heterotrimerisation domain of extracellular hemoglobin linker subunits | 8042063 | 3000575 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | LDL receptor-like module | 8042065 | 3000728 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Heterotrimerisation domain of extracellular hemoglobin linker subunits | 8042067 | 3000575 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Extracellular hemoglobin linker subunit receptor domain | 8042064 | 3000638 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00042 | e5m3lA1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
E | PF00042 | e5m3lE1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
I | PF00042 | e5m3lI1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
B | PF00042 | e5m3lB1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
F | PF00042 | e5m3lF1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
J | PF00042 | e5m3lJ1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
C | PF00042 | e5m3lC1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
G | PF00042 | e5m3lG1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
K | PF00042 | e5m3lK1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
D | PF00042 | e5m3lD1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
H | PF00042 | e5m3lH1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
L | PF00042 | e5m3lL1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: PF00042 | ECOD (1.6) |
M | PF16915 | e5m3lM2 | A: beta barrels | X: Lipocalins/Streptavidin | H: Quinohemoprotein amine dehydrogenase A chain, domain 3-like (From Topology) | T: Quinohemoprotein amine dehydrogenase A chain, domain 3-like | F: PF16915 | ECOD (1.6) |
M | F_UNCLASSIFIED | e5m3lM1 | A: few secondary structure elements | X: EGF-like | H: LDL receptor-like module (From Topology) | T: LDL receptor-like module | F: F_UNCLASSIFIED | ECOD (1.6) |
M | PF00057 | e5m3lM3 | A: few secondary structure elements | X: EGF-like | H: LDL receptor-like module (From Topology) | T: LDL receptor-like module | F: PF00057 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF16915 | Annelid erythrocruorin linker subunit C-terminus (Eryth_link_C) | Annelid erythrocruorin linker subunit C-terminus | This domain is found in linker subunits of the erythrocruorin respiratory complex in annelid worms [1]. | Domain | |
PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat | |
PF16915 | Annelid erythrocruorin linker subunit C-terminus (Eryth_link_C) | Annelid erythrocruorin linker subunit C-terminus | This domain is found in linker subunits of the erythrocruorin respiratory complex in annelid worms [1]. | Domain | |
PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat | |
PF16915 | Annelid erythrocruorin linker subunit C-terminus (Eryth_link_C) | Annelid erythrocruorin linker subunit C-terminus | This domain is found in linker subunits of the erythrocruorin respiratory complex in annelid worms [1]. | Domain | |
PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Extracellular globin-4 | - | |||
Extracellular globin-2 | - | |||
Extracellular globin-3 | - | |||
Hemoglobin chain d1 | - | |||
Hemoglobin linker chain L1 | - | - | ||
Extracellular hemoglobin linker L2 subunit | - | - | ||
Extracellular hemoglobin linker L3 subunit | - | - |