5GZ5

Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhosphodiest_Ce5gz5A3 A: a+b two layersX: Alpha-beta plaitsH: Phosphonoacetate hydrolase insertion domain (From Topology)T: Phosphonoacetate hydrolase insertion domainF: Phosphodiest_CECOD (1.6)
APhosphodiest_Ne5gz5A4 A: a/b three-layered sandwichesX: Alkaline phosphatase-like (From Topology)H: Alkaline phosphatase-like (From Topology)T: Alkaline phosphatase-likeF: Phosphodiest_NECOD (1.6)
AEndonuclease_NSe5gz5A1 A: few secondary structure elementsX: His-Me finger endonucleases (From Homology)H: His-Me finger endonucleasesT: His-Me finger endonucleasesF: Endonuclease_NSECOD (1.6)
ASomatomedin_Be5gz5A2 A: few secondary structure elementsX: Somatomedin B domain (From Topology)H: Somatomedin B domain (From Topology)T: Somatomedin B domainF: Somatomedin_BECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01033Somatomedin B domain (Somatomedin_B)Somatomedin B domain- Family
PF01223DNA/RNA non-specific endonuclease (Endonuclease_NS)DNA/RNA non-specific endonuclease- Domain
PF01663Type I phosphodiesterase / nucleotide pyrophosphatase (Phosphodiest)Type I phosphodiesterase / nucleotide pyrophosphatase- Family