5FFJ
Structure of a nuclease-deletion mutant of the Type ISP restriction-modification enzyme LlaGI in complex with a DNA substrate mimic
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | PF22240 | e5ffjB5 | A: alpha arrays | X: N-terminal helical domain in restriction-modification system methylation subunit-like | H: Helical domain in type ISP restriction-modification enzymes (From Topology) | T: Helical domain in type ISP restriction-modification enzymes | F: PF22240 | ECOD (1.6) |
D [auth B] | PF18135 | e5ffjB4 | A: a+b complex topology | X: DNA methylase specificity domain (From Topology) | H: DNA methylase specificity domain (From Topology) | T: DNA methylase specificity domain | F: PF18135 | ECOD (1.6) |
D [auth B] | PF02384 | e5ffjB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF02384 | ECOD (1.6) |
D [auth B] | PF00271 | e5ffjB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
D [auth B] | PF04851 | e5ffjB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04851 | ECOD (1.6) |
A | PF22240 | e5ffjA4 | A: alpha arrays | X: N-terminal helical domain in restriction-modification system methylation subunit-like | H: Helical domain in type ISP restriction-modification enzymes (From Topology) | T: Helical domain in type ISP restriction-modification enzymes | F: PF22240 | ECOD (1.6) |
A | PF18135 | e5ffjA3 | A: a+b complex topology | X: DNA methylase specificity domain (From Topology) | H: DNA methylase specificity domain (From Topology) | T: DNA methylase specificity domain | F: PF18135 | ECOD (1.6) |
A | PF02384 | e5ffjA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF02384 | ECOD (1.6) |
A | PF04851 | e5ffjA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04851 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF18135 | Type ISP C-terminal specificity domain (Type_ISP_C) | Type ISP C-terminal specificity domain | This is the C-terminal domain of Type ISP restriction-modification enzyme LLaBIII present in Lactococcus lactis subsp. cremoris. Type ISP restriction-modification (RM) enzymes provide a potent defence against infection by foreign and bacteriophage DN ... | Domain |
A, D [auth B] | PF02384 | N-6 DNA Methylase (N6_Mtase) | N-6 DNA Methylase | - | Family |
A, D [auth B] | PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR002052 | DNA methylase, N-6 adenine-specific, conserved site | Conserved Site |
A, D [auth B] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
A, D [auth B] | IPR003356 | DNA methylase, adenine-specific | Domain |
A, D [auth B] | IPR006935 | Helicase/UvrB, N-terminal | Domain |
A, D [auth B] | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |
A, D [auth B] | IPR001650 | Helicase, C-terminal domain-like | Domain |
A, D [auth B] | IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain |
A, D [auth B] | IPR039442 | Mrr-like domain | Domain |
A, D [auth B] | IPR041635 | Type ISP restriction-modification enzyme LLaBIII, C-terminal specificity domain | Domain |
A, D [auth B] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |