5DUD
Crystal structure of E. coli YbgJK
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02626 | e5dudA2 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: PF02626 | ECOD (1.6) |
A | PF02626 | e5dudA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02626 | ECOD (1.6) |
C | PF02626 | e5dudC1 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: PF02626 | ECOD (1.6) |
C | PF02626 | e5dudC2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02626 | ECOD (1.6) |
B | PF02682 | e5dudB1 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: PF02682 | ECOD (1.6) |
B | PF02682 | e5dudB2 | A: a+b two layers | X: Glucose permease domain IIB-like | H: PH0987 N-terminal domain-like (From Topology) | T: PH0987 N-terminal domain-like | F: PF02682 | ECOD (1.6) |
D | PF02682 | e5dudD2 | A: beta barrels | X: Cyclophilin-like (From Topology) | H: Cyclophilin-like (From Topology) | T: Cyclophilin-like | F: PF02682 | ECOD (1.6) |
D | PF02682 | e5dudD1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: PH0987 N-terminal domain-like (From Topology) | T: PH0987 N-terminal domain-like | F: PF02682 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.100.10 | Mainly Beta | Beta Barrel | Cyclophilin | Cyclophilin-like | CATH (4.3.0) |
C | 2.40.100.10 | Mainly Beta | Beta Barrel | Cyclophilin | Cyclophilin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02626 | Carboxyltransferase domain, subdomain A and B (CT_A_B) | Carboxyltransferase domain, subdomain A and B | - | Family | |
PF02682 | Carboxyltransferase domain, subdomain C and D (CT_C_D) | Carboxyltransferase domain, subdomain C and D | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003778 | Carboxyltransferase domain, subdomain A and B | Domain | |
IPR029000 | Cyclophilin-like domain superfamily | Homologous Superfamily | |
IPR003833 | Carboxyltransferase domain, subdomain C and D | Domain | |
IPR029000 | Cyclophilin-like domain superfamily | Homologous Superfamily | |
IPR010016 | 5-oxoprolinase subunit B | Family |