5C31

Constitutively active Sin recombinase catalytic domain reveals two rotational intermediates

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5c31a_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d5c31b_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C	d5c31c_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
D	d5c31d_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
E	d5c31e_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
F	d5c31f_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
G	d5c31g_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
H	d5c31h_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
I	d5c31i_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
K	d5c31k_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
L	d5c31l_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
J	d5c31j_	Alpha and beta proteins (a/b)	Resolvase-like	Resolvase-like	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Resolvase-like	8071362	3000065	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00239	e5c31A1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
B	PF00239	e5c31B1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
C	PF00239	e5c31C1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
D	PF00239	e5c31D1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
E	PF00239	e5c31E1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
F	PF00239	e5c31F1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
G	PF00239	e5c31G1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
H	PF00239	e5c31H1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
I	PF00239	e5c31I1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
K	PF00239	e5c31K1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
L	PF00239	e5c31L1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)
J	PF00239	e5c31J1	A: a/b three-layered sandwiches	X: Resolvase-like (From Topology)	H: Resolvase-like (From Topology)	T: Resolvase-like	F: PF00239	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
B	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
C	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
D	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
E	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
F	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
G	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
H	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
I	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
K	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
L	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)
J	3.40.50.1390	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Resolvase, N-terminal catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00239	Resolvase, N terminal domain (Resolvase)	Resolvase, N terminal domain	The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see Pfam:PF02796.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Sin, putative plasmid resolvase dimer	DNA binding binding organic cyclic compound binding nucleic acid binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA strand exchange activity catalytic activity	nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process cellular process transposition	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036162	Resolvase-like, N-terminal catalytic domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006118	Recombinase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006119	Resolvase, N-terminal catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006120	Resolvase, HTH domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.